CF504111 | Citrus Genome Database

Overview


Name	CF504111
Unique Name	CF504111
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	256

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_EUPFO (Tubulin beta chain OS=Euplotes focardii PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.958e-21
Identity = 33/39 (84.62%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQ GQCGNQIG+KFWEVI DEHGVDPTG Y GD
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGVDPTGTYHGD 39

HSP 2 Score: 34.6538 bits (78), Expect = 2.958e-21
Identity = 15/21 (71.43%), Postives = 18/21 (85.71%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+G +  PRA+LMDLEPGTM
Sbjct:   53 EATGRKICPRAMLMDLEPGTM 73

HSP 3 Score: 29.261 bits (64), Expect = 2.958e-21
Identity = 13/22 (59.09%), Postives = 16/22 (72.73%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRSFRWKV 210
            G  DLQLERINVY+N +   K+
Sbjct:   38 GDSDLQLERINVYFNEATGRKI 59

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB4_CHICK (Tubulin beta-4 chain OS=Gallus gallus PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.833e-21
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DP+G Y GD
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGD 39

HSP 2 Score: 37.7354 bits (86), Expect = 3.833e-21
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EAS  +YVPRA+L+DLEPGTM
Sbjct:   53 EASSHKYVPRAILVDLEPGTM 73

HSP 3 Score: 28.4906 bits (62), Expect = 3.833e-21
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERI+VYYN +
Sbjct:   38 GDSDLQLERISVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB3_RAT (Tubulin beta-3 chain OS=Rattus norvegicus GN=Tubb3 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.833e-21
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DP+G Y GD
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGD 39

HSP 2 Score: 37.7354 bits (86), Expect = 3.833e-21
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EAS  +YVPRA+L+DLEPGTM
Sbjct:   53 EASSHKYVPRAILVDLEPGTM 73

HSP 3 Score: 28.4906 bits (62), Expect = 3.833e-21
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERI+VYYN +
Sbjct:   38 GDSDLQLERISVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB3_MOUSE (Tubulin beta-3 chain OS=Mus musculus GN=Tubb3 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.833e-21
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DP+G Y GD
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGD 39

HSP 2 Score: 37.7354 bits (86), Expect = 3.833e-21
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EAS  +YVPRA+L+DLEPGTM
Sbjct:   53 EASSHKYVPRAILVDLEPGTM 73

HSP 3 Score: 28.4906 bits (62), Expect = 3.833e-21
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERI+VYYN +
Sbjct:   38 GDSDLQLERISVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB3_MACFA (Tubulin beta-3 chain OS=Macaca fascicularis GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.833e-21
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DP+G Y GD
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGD 39

HSP 2 Score: 37.7354 bits (86), Expect = 3.833e-21
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EAS  +YVPRA+L+DLEPGTM
Sbjct:   53 EASSHKYVPRAILVDLEPGTM 73

HSP 3 Score: 28.4906 bits (62), Expect = 3.833e-21
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERI+VYYN +
Sbjct:   38 GDSDLQLERISVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB3_HUMAN (Tubulin beta-3 chain OS=Homo sapiens GN=TUBB3 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.833e-21
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DP+G Y GD
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGD 39

HSP 2 Score: 37.7354 bits (86), Expect = 3.833e-21
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EAS  +YVPRA+L+DLEPGTM
Sbjct:   53 EASSHKYVPRAILVDLEPGTM 73

HSP 3 Score: 28.4906 bits (62), Expect = 3.833e-21
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERI+VYYN +
Sbjct:   38 GDSDLQLERISVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB3_BOVIN (Tubulin beta-3 chain OS=Bos taurus GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.833e-21
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DP+G Y GD
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGD 39

HSP 2 Score: 37.7354 bits (86), Expect = 3.833e-21
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EAS  +YVPRA+L+DLEPGTM
Sbjct:   53 EASSHKYVPRAILVDLEPGTM 73

HSP 3 Score: 28.4906 bits (62), Expect = 3.833e-21
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERI+VYYN +
Sbjct:   38 GDSDLQLERISVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB2_CAEEL (Tubulin beta-2 chain OS=Caenorhabditis elegans GN=tbb-2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.082e-20
Identity = 28/39 (71.79%), Postives = 34/39 (87.18%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+H+Q GQCGNQIGSKFWEVI DEHG+ P G ++G+
Sbjct:    1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFKGE 39

HSP 2 Score: 40.0466 bits (92), Expect = 1.082e-20
Identity = 17/21 (80.95%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+ G+YVPRAVL+DLEPGTM
Sbjct:   53 EANNGKYVPRAVLVDLEPGTM 73

HSP 3 Score: 28.4906 bits (62), Expect = 1.082e-20
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERI+VYYN +
Sbjct:   38 GETDLQLERIDVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB2_DROME (Tubulin beta-2 chain OS=Drosophila melanogaster GN=betaTub85D PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.083e-20
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQ GQCGNQIG KFWEVI DEH +D TG Y GD
Sbjct:    1 MREIVHIQAGQCGNQIGGKFWEVISDEHCIDATGTYYGD 39

HSP 2 Score: 39.6614 bits (91), Expect = 1.083e-20
Identity = 16/21 (76.19%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+G +YVPRA+L+DLEPGTM
Sbjct:   53 EATGAKYVPRAILVDLEPGTM 73

HSP 3 Score: 30.4166 bits (67), Expect = 1.083e-20
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERINVYYN +
Sbjct:   38 GDSDLQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB2_DROHY (Tubulin beta-2 chain OS=Drosophila hydei GN=betaTub85D PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.083e-20
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQ GQCGNQIG KFWEVI DEH +D TG Y GD
Sbjct:    1 MREIVHIQAGQCGNQIGGKFWEVISDEHCIDATGTYYGD 39

HSP 2 Score: 39.6614 bits (91), Expect = 1.083e-20
Identity = 16/21 (76.19%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+G +YVPRA+L+DLEPGTM
Sbjct:   53 EATGAKYVPRAILVDLEPGTM 73

HSP 3 Score: 30.4166 bits (67), Expect = 1.083e-20
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERINVYYN +
Sbjct:   38 GDSDLQLERINVYYNEA 54

The following BLAST results are available for this feature:

BLAST of CF504111 vs. ExPASy Swiss-Prot

BLAST of CF504111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219


Match Name	E-value	Identity	Description
TBB_EUPFO	2.958e-21	84.62	Tubulin beta chain OS=Euplotes focardii PE=3 SV=1	[more]
TBB4_CHICK	3.833e-21	79.49	Tubulin beta-4 chain OS=Gallus gallus PE=1 SV=1	[more]
TBB3_RAT	3.833e-21	79.49	Tubulin beta-3 chain OS=Rattus norvegicus GN=Tubb3...	[more]
TBB3_MOUSE	3.833e-21	79.49	Tubulin beta-3 chain OS=Mus musculus GN=Tubb3 PE=1...	[more]
TBB3_MACFA	3.833e-21	79.49	Tubulin beta-3 chain OS=Macaca fascicularis GN=TUB...	[more]
TBB3_HUMAN	3.833e-21	79.49	Tubulin beta-3 chain OS=Homo sapiens GN=TUBB3 PE=1...	[more]
TBB3_BOVIN	3.833e-21	79.49	Tubulin beta-3 chain OS=Bos taurus GN=TUBB3 PE=2 S...	[more]
TBB2_CAEEL	1.082e-20	71.79	Tubulin beta-2 chain OS=Caenorhabditis elegans GN=...	[more]
TBB2_DROME	1.083e-20	76.92	Tubulin beta-2 chain OS=Drosophila melanogaster GN...	[more]
TBB2_DROHY	1.083e-20	76.92	Tubulin beta-2 chain OS=Drosophila hydei GN=betaTu...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_119000-599 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_A02 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF504111 ID=CF504111; Name=CF504111; organism=Citrus sinensis; type=EST; length=256bp
CTTCGTTTCCTTTCCGTTTGAGATAAATGAGAGAGATCTTGCACATTCAA
GGAGGCCAATGCGGCAACCAAATCGGATCCAAATTCTGGGAAGTCATTTG
CGACGAGCATGGCGTGGACCCCACGGGGAAGTATAGAGGTGACCGGGGTT
GAGGATCTTCAACTGGAGCGGATCAATGTCTACTACAACCGAAGCTTCCG
GTGGAAGGTACGTGCCTCGGGCTGTTCTCATGGATCTTGAACCCGGTACC
ATGGGA