CF504111 | Citrus Genome Database

Overview


Name	CF504111
Unique Name	CF504111
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	256

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_ENCCU (Tubulin beta chain OS=Encephalitozoon cuniculi GN=TUB2 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.490e-18
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRG 140
            MREI+H+Q GQCGNQ+G KFWE I  EHG+D TG+Y G
Sbjct:    1 MREIIHLQTGQCGNQVGCKFWETISGEHGIDQTGRYVG 38

HSP 2 Score: 38.1206 bits (87), Expect = 1.490e-18
Identity = 17/21 (80.95%), Postives = 19/21 (90.48%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EAS  +YVPRAVL+DLEPGTM
Sbjct:   53 EASSKKYVPRAVLIDLEPGTM 73

HSP 3 Score: 28.8758 bits (63), Expect = 1.490e-18
Identity = 12/17 (70.59%), Postives = 13/17 (76.47%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  D QLERINVYYN +
Sbjct:   38 GTSDNQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB2_EMENI (Tubulin beta-2 chain OS=Emericella nidulans GN=tubC PE=3 SV=2)

HSP 1 Score: 62.3882 bits (150), Expect = 2.498e-18
Identity = 25/39 (64.10%), Postives = 31/39 (79.49%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+H+Q GQCGNQ+GS FW+ I  EHG+D +G Y GD
Sbjct:    1 MREIVHLQTGQCGNQVGSAFWQTISGEHGLDASGIYTGD 39

HSP 2 Score: 39.6614 bits (91), Expect = 2.498e-18
Identity = 17/21 (80.95%), Postives = 19/21 (90.48%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA G +YVPRAVL+DLEPGTM
Sbjct:   53 EAGGNKYVPRAVLIDLEPGTM 73

HSP 3 Score: 29.6462 bits (65), Expect = 2.498e-18
Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = 1

Query:  142 TGVEDLQLERINVYYNRS 195
            TG  DLQLER+NVY+N +
Sbjct:   37 TGDSDLQLERMNVYFNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_RHYSE (Tubulin beta chain OS=Rhynchosporium secalis PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 3.237e-18
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRG 140
            MREI+H+Q GQCGNQIG+ FW+ I  EHG+D +G Y G
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGLDGSGVYNG 38

HSP 2 Score: 41.2022 bits (95), Expect = 3.237e-18
Identity = 18/21 (85.71%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EASG +YVPRAVL+DLEPGTM
Sbjct:   53 EASGNKYVPRAVLVDLEPGTM 73

HSP 3 Score: 30.4166 bits (67), Expect = 3.237e-18
Identity = 13/23 (56.52%), Postives = 16/23 (69.57%), Query Frame = 1

Query:  127 GSIEVTGVEDLQLERINVYYNRS 195
            GS    G  DLQLER+NVY+N +
Sbjct:   32 GSGVYNGTSDLQLERLNVYFNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_PLESA (Tubulin beta chain OS=Pleurotus sajor-caju PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.193e-18
Identity = 26/39 (66.67%), Postives = 34/39 (87.18%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+H+Q GQC NQIG+KFWEV+ DEHG++P G Y+G+
Sbjct:    1 MREIVHLQTGQCRNQIGAKFWEVVSDEHGIEPDGLYKGN 39

HSP 2 Score: 35.8094 bits (81), Expect = 4.193e-18
Identity = 15/21 (71.43%), Postives = 17/21 (80.95%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            E    +YVPRAVL+DLEPGTM
Sbjct:   53 EVGANKYVPRAVLVDLEPGTM 73

HSP 3 Score: 28.1054 bits (61), Expect = 4.193e-18
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = 1

Query:  145 GVEDLQLERINVYYN 189
            G  DLQLERI+VYYN
Sbjct:   38 GNNDLQLERISVYYN 52

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB1_SUIBO (Tubulin beta-1 chain OS=Suillus bovinus GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.193e-18
Identity = 27/38 (71.05%), Postives = 33/38 (86.84%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRG 140
            MREI+HIQ GQCGNQIG+KFWEV+ DEHG++  G Y+G
Sbjct:    1 MREIVHIQTGQCGNQIGAKFWEVVSDEHGIERDGLYKG 38

HSP 2 Score: 35.4242 bits (80), Expect = 4.193e-18
Identity = 15/21 (71.43%), Postives = 17/21 (80.95%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            E    +YVPRAVL+DLEPGTM
Sbjct:   53 EIGSNKYVPRAVLVDLEPGTM 73

HSP 3 Score: 28.4906 bits (62), Expect = 4.193e-18
Identity = 11/15 (73.33%), Postives = 13/15 (86.67%), Query Frame = 1

Query:  145 GVEDLQLERINVYYN 189
            G  D+QLERI+VYYN
Sbjct:   38 GTNDMQLERISVYYN 52

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_MYCPJ (Tubulin beta chain OS=Mycosphaerella pini GN=TUB1 PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 4.193e-18
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRG 140
            MREI+H+Q GQCGNQIG+ FW+ I  EHG+D +G Y G
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGLDGSGVYNG 38

HSP 2 Score: 41.2022 bits (95), Expect = 4.193e-18
Identity = 18/21 (85.71%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EASG +YVPRAVL+DLEPGTM
Sbjct:   53 EASGNKYVPRAVLVDLEPGTM 73

HSP 3 Score: 30.0314 bits (66), Expect = 4.193e-18
Identity = 13/23 (56.52%), Postives = 16/23 (69.57%), Query Frame = 1

Query:  127 GSIEVTGVEDLQLERINVYYNRS 195
            GS    G  DLQLER+NVY+N +
Sbjct:   32 GSGVYNGTSDLQLERMNVYFNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_MYCGR (Tubulin beta chain OS=Mycosphaerella graminicola GN=TUB1 PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 4.193e-18
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRG 140
            MREI+H+Q GQCGNQIG+ FW+ I  EHG+D +G Y G
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGLDGSGVYNG 38

HSP 2 Score: 41.2022 bits (95), Expect = 4.193e-18
Identity = 18/21 (85.71%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EASG +YVPRAVL+DLEPGTM
Sbjct:   53 EASGNKYVPRAVLVDLEPGTM 73

HSP 3 Score: 30.0314 bits (66), Expect = 4.193e-18
Identity = 13/23 (56.52%), Postives = 16/23 (69.57%), Query Frame = 1

Query:  127 GSIEVTGVEDLQLERINVYYNRS 195
            GS    G  DLQLER+NVY+N +
Sbjct:   32 GSGVYNGTSDLQLERMNVYFNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_ERYGR (Tubulin beta chain OS=Erysiphe graminis subsp. hordei GN=TUB2 PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 4.193e-18
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRG 140
            MREI+H+Q GQCGNQIG+ FW+ I  EHG+D +G Y G
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGLDGSGVYNG 38

HSP 2 Score: 41.2022 bits (95), Expect = 4.193e-18
Identity = 18/21 (85.71%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EASG +YVPRAVL+DLEPGTM
Sbjct:   53 EASGNKYVPRAVLVDLEPGTM 73

HSP 3 Score: 30.0314 bits (66), Expect = 4.193e-18
Identity = 13/23 (56.52%), Postives = 16/23 (69.57%), Query Frame = 1

Query:  127 GSIEVTGVEDLQLERINVYYNRS 195
            GS    G  DLQLER+NVY+N +
Sbjct:   32 GSGVYNGTSDLQLERMNVYFNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_CERBT (Tubulin beta chain OS=Cercospora beticola GN=TUB1 PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 4.193e-18
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRG 140
            MREI+H+Q GQCGNQIG+ FW+ I  EHG+D +G Y G
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGLDGSGVYNG 38

HSP 2 Score: 41.2022 bits (95), Expect = 4.193e-18
Identity = 18/21 (85.71%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EASG +YVPRAVL+DLEPGTM
Sbjct:   53 EASGNKYVPRAVLVDLEPGTM 73

HSP 3 Score: 30.0314 bits (66), Expect = 4.193e-18
Identity = 13/23 (56.52%), Postives = 16/23 (69.57%), Query Frame = 1

Query:  127 GSIEVTGVEDLQLERINVYYNRS 195
            GS    G  DLQLER+NVY+N +
Sbjct:   32 GSGVYNGTSDLQLERMNVYFNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_BOTFU (Tubulin beta chain OS=Botryotinia fuckeliana GN=tubA PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 4.193e-18
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRG 140
            MREI+H+Q GQCGNQIG+ FW+ I  EHG+D +G Y G
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGLDGSGVYNG 38

HSP 2 Score: 41.2022 bits (95), Expect = 4.193e-18
Identity = 18/21 (85.71%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EASG +YVPRAVL+DLEPGTM
Sbjct:   53 EASGNKYVPRAVLVDLEPGTM 73

HSP 3 Score: 30.0314 bits (66), Expect = 4.193e-18
Identity = 13/23 (56.52%), Postives = 16/23 (69.57%), Query Frame = 1

Query:  127 GSIEVTGVEDLQLERINVYYNRS 195
            GS    G  DLQLER+NVY+N +
Sbjct:   32 GSGVYNGTSDLQLERMNVYFNEA 54

The following BLAST results are available for this feature:

BLAST of CF504111 vs. ExPASy Swiss-Prot

BLAST of CF504111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219


Match Name	E-value	Identity	Description
TBB_ENCCU	1.490e-18	68.42	Tubulin beta chain OS=Encephalitozoon cuniculi GN=...	[more]
TBB2_EMENI	2.498e-18	64.10	Tubulin beta-2 chain OS=Emericella nidulans GN=tub...	[more]
TBB_RHYSE	3.237e-18	63.16	Tubulin beta chain OS=Rhynchosporium secalis PE=3 ...	[more]
TBB_PLESA	4.193e-18	66.67	Tubulin beta chain OS=Pleurotus sajor-caju PE=2 SV...	[more]
TBB1_SUIBO	4.193e-18	71.05	Tubulin beta-1 chain OS=Suillus bovinus GN=TUBB1 P...	[more]
TBB_MYCPJ	4.193e-18	63.16	Tubulin beta chain OS=Mycosphaerella pini GN=TUB1 ...	[more]
TBB_MYCGR	4.193e-18	63.16	Tubulin beta chain OS=Mycosphaerella graminicola G...	[more]
TBB_ERYGR	4.193e-18	63.16	Tubulin beta chain OS=Erysiphe graminis subsp. hor...	[more]
TBB_CERBT	4.193e-18	63.16	Tubulin beta chain OS=Cercospora beticola GN=TUB1 ...	[more]
TBB_BOTFU	4.193e-18	63.16	Tubulin beta chain OS=Botryotinia fuckeliana GN=tu...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_119000-599 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_A02 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF504111 ID=CF504111; Name=CF504111; organism=Citrus sinensis; type=EST; length=256bp
CTTCGTTTCCTTTCCGTTTGAGATAAATGAGAGAGATCTTGCACATTCAA
GGAGGCCAATGCGGCAACCAAATCGGATCCAAATTCTGGGAAGTCATTTG
CGACGAGCATGGCGTGGACCCCACGGGGAAGTATAGAGGTGACCGGGGTT
GAGGATCTTCAACTGGAGCGGATCAATGTCTACTACAACCGAAGCTTCCG
GTGGAAGGTACGTGCCTCGGGCTGTTCTCATGGATCTTGAACCCGGTACC
ATGGGA