CF504111 | Citrus Genome Database

Overview


Name	CF504111
Unique Name	CF504111
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	256

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_SCHCO (Tubulin beta chain OS=Schizophyllum commune GN=TUB-2 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 1.979e-17
Identity = 26/38 (68.42%), Postives = 33/38 (86.84%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRG 140
            MREI+H+Q GQCGNQIG+KFWEV+ DEHG++  G Y+G
Sbjct:    1 MREIVHLQTGQCGNQIGAKFWEVVSDEHGIEADGLYKG 38

HSP 2 Score: 35.039 bits (79), Expect = 1.979e-17
Identity = 14/21 (66.67%), Postives = 17/21 (80.95%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            E    +YVPRA+L+DLEPGTM
Sbjct:   53 EIGANKYVPRAILVDLEPGTM 73

HSP 3 Score: 26.9498 bits (58), Expect = 1.979e-17
Identity = 11/15 (73.33%), Postives = 12/15 (80.00%), Query Frame = 1

Query:  145 GVEDLQLERINVYYN 189
            G  D QLERI+VYYN
Sbjct:   38 GTNDQQLERISVYYN 52

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_NEUCR (Tubulin beta chain OS=Neurospora crassa GN=tub-2 PE=1 SV=2)

HSP 1 Score: 60.077 bits (144), Expect = 1.979e-17
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRG 140
            MREI+H+Q GQCGNQIG+ FW+ I  EHG+D +G Y G
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGLDASGVYNG 38

HSP 2 Score: 41.2022 bits (95), Expect = 1.979e-17
Identity = 18/21 (85.71%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EASG +YVPRAVL+DLEPGTM
Sbjct:   53 EASGNKYVPRAVLVDLEPGTM 73

HSP 3 Score: 27.335 bits (59), Expect = 1.979e-17
Identity = 10/17 (58.82%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  +LQLER+NVY+N +
Sbjct:   38 GTSELQLERMNVYFNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_SCHPO (Tubulin beta chain OS=Schizosaccharomyces pombe GN=nda3 PE=1 SV=2)

HSP 1 Score: 62.7734 bits (151), Expect = 2.562e-17
Identity = 25/38 (65.79%), Postives = 29/38 (76.32%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRG 140
            MREI+HIQ GQCGNQ+G+ FW  I DEHG+D  G Y G
Sbjct:    1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHG 38

HSP 2 Score: 42.3578 bits (98), Expect = 2.562e-17
Identity = 18/21 (85.71%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GG+YVPRAVL+DLEPGTM
Sbjct:   53 EAAGGKYVPRAVLVDLEPGTM 73

HSP 3 Score: 23.0978 bits (48), Expect = 2.562e-17
Identity = 8/17 (47.06%), Postives = 12/17 (70.59%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  + Q ER+NVY+N +
Sbjct:   38 GTSEAQHERLNVYFNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB1_TRIVE (Tubulin beta-1 chain OS=Trichoderma virens PE=2 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 2.562e-17
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRG 140
            MREI+H+Q GQCGNQ+GS FW+ I  EHG+D +G Y G
Sbjct:    1 MREIVHLQTGQCGNQVGSAFWQTISGEHGLDASGVYGG 38

HSP 2 Score: 41.2022 bits (95), Expect = 2.562e-17
Identity = 18/21 (85.71%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EASG +YVPRAVL+DLEPGTM
Sbjct:   53 EASGNKYVPRAVLVDLEPGTM 73

HSP 3 Score: 26.9498 bits (58), Expect = 2.562e-17
Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  D QLER+NVY+N +
Sbjct:   38 GTSDQQLERLNVYFNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_ASPPA (Tubulin beta chain OS=Aspergillus parasiticus GN=benR PE=3 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 3.317e-17
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRG 140
            MREI+++Q GQCGNQIG+ FW+ I  EHG+D +G Y G
Sbjct:    1 MREIVYLQTGQCGNQIGAAFWQTISGEHGLDGSGVYNG 38

HSP 2 Score: 41.2022 bits (95), Expect = 3.317e-17
Identity = 18/21 (85.71%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EASG +YVPRAVL+DLEPGTM
Sbjct:   53 EASGNKYVPRAVLVDLEPGTM 73

HSP 3 Score: 29.261 bits (64), Expect = 3.317e-17
Identity = 13/23 (56.52%), Postives = 16/23 (69.57%), Query Frame = 1

Query:  127 GSIEVTGVEDLQLERINVYYNRS 195
            GS    G  DLQLER+NVY+N +
Sbjct:   32 GSGVYNGSSDLQLERMNVYFNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_COCHE (Tubulin beta chain OS=Cochliobolus heterostrophus GN=TUB1 PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 5.563e-17
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRG 140
            MREI+H+Q GQCGNQIG+ FW+ I  EHG+D +G Y G
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGLDGSGVYNG 38

HSP 2 Score: 37.3502 bits (85), Expect = 5.563e-17
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EAS  ++VPRAVL+DLEPGTM
Sbjct:   53 EASNNKFVPRAVLVDLEPGTM 73

HSP 3 Score: 30.0314 bits (66), Expect = 5.563e-17
Identity = 13/23 (56.52%), Postives = 16/23 (69.57%), Query Frame = 1

Query:  127 GSIEVTGVEDLQLERINVYYNRS 195
            GS    G  DLQLER+NVY+N +
Sbjct:   32 GSGVYNGTSDLQLERMNVYFNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_METAN (Tubulin beta chain OS=Metarhizium anisopliae PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 9.323e-17
Identity = 24/38 (63.16%), Postives = 29/38 (76.32%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRG 140
            MREI+H+Q GQCGNQIG+ FW+ I  EHG+D  G Y G
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGLDSNGVYNG 38

HSP 2 Score: 41.2022 bits (95), Expect = 9.323e-17
Identity = 18/21 (85.71%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EASG +YVPRAVL+DLEPGTM
Sbjct:   53 EASGNKYVPRAVLVDLEPGTM 73

HSP 3 Score: 25.409 bits (54), Expect = 9.323e-17
Identity = 9/17 (52.94%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  +LQLER++VY+N +
Sbjct:   38 GTSELQLERMSVYFNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_EPITY (Tubulin beta chain OS=Epichloe typhina GN=TUBB PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 9.323e-17
Identity = 24/38 (63.16%), Postives = 29/38 (76.32%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRG 140
            MREI+H+Q GQCGNQIG+ FW+ I  EHG+D  G Y G
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGLDSNGVYNG 38

HSP 2 Score: 41.2022 bits (95), Expect = 9.323e-17
Identity = 18/21 (85.71%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EASG +YVPRAVL+DLEPGTM
Sbjct:   53 EASGNKYVPRAVLVDLEPGTM 73

HSP 3 Score: 25.409 bits (54), Expect = 9.323e-17
Identity = 9/17 (52.94%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  +LQLER++VY+N +
Sbjct:   38 GTSELQLERMSVYFNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_ACRCO (Tubulin beta chain OS=Acremonium coenophialum GN=TUB2 PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 9.323e-17
Identity = 24/38 (63.16%), Postives = 29/38 (76.32%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRG 140
            MREI+H+Q GQCGNQIG+ FW+ I  EHG+D  G Y G
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGLDSNGVYNG 38

HSP 2 Score: 41.2022 bits (95), Expect = 9.323e-17
Identity = 18/21 (85.71%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EASG +YVPRAVL+DLEPGTM
Sbjct:   53 EASGNKYVPRAVLVDLEPGTM 73

HSP 3 Score: 25.409 bits (54), Expect = 9.323e-17
Identity = 9/17 (52.94%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  +LQLER++VY+N +
Sbjct:   38 GTSELQLERMSVYFNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_PESMI (Tubulin beta chain OS=Pestalotiopsis microspora GN=TUBB PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 9.326e-17
Identity = 24/38 (63.16%), Postives = 29/38 (76.32%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRG 140
            MREI+H+Q GQCGNQIG+ FW+ I  EHG+D  G Y G
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGLDSNGVYNG 38

HSP 2 Score: 41.2022 bits (95), Expect = 9.326e-17
Identity = 18/21 (85.71%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EASG +YVPRAVL+DLEPGTM
Sbjct:   53 EASGNKYVPRAVLVDLEPGTM 73

HSP 3 Score: 25.409 bits (54), Expect = 9.326e-17
Identity = 9/17 (52.94%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  +LQLER++VY+N +
Sbjct:   38 GTSELQLERMSVYFNEA 54

The following BLAST results are available for this feature:

BLAST of CF504111 vs. ExPASy Swiss-Prot

BLAST of CF504111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219


Match Name	E-value	Identity	Description
TBB_SCHCO	1.979e-17	68.42	Tubulin beta chain OS=Schizophyllum commune GN=TUB...	[more]
TBB_NEUCR	1.979e-17	63.16	Tubulin beta chain OS=Neurospora crassa GN=tub-2 P...	[more]
TBB_SCHPO	2.562e-17	65.79	Tubulin beta chain OS=Schizosaccharomyces pombe GN...	[more]
TBB1_TRIVE	2.562e-17	63.16	Tubulin beta-1 chain OS=Trichoderma virens PE=2 SV...	[more]
TBB_ASPPA	3.317e-17	60.53	Tubulin beta chain OS=Aspergillus parasiticus GN=b...	[more]
TBB_COCHE	5.563e-17	63.16	Tubulin beta chain OS=Cochliobolus heterostrophus ...	[more]
TBB_METAN	9.323e-17	63.16	Tubulin beta chain OS=Metarhizium anisopliae PE=3 ...	[more]
TBB_EPITY	9.323e-17	63.16	Tubulin beta chain OS=Epichloe typhina GN=TUBB PE=...	[more]
TBB_ACRCO	9.323e-17	63.16	Tubulin beta chain OS=Acremonium coenophialum GN=T...	[more]
TBB_PESMI	9.326e-17	63.16	Tubulin beta chain OS=Pestalotiopsis microspora GN...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_119000-599 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_A02 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF504111 ID=CF504111; Name=CF504111; organism=Citrus sinensis; type=EST; length=256bp
CTTCGTTTCCTTTCCGTTTGAGATAAATGAGAGAGATCTTGCACATTCAA
GGAGGCCAATGCGGCAACCAAATCGGATCCAAATTCTGGGAAGTCATTTG
CGACGAGCATGGCGTGGACCCCACGGGGAAGTATAGAGGTGACCGGGGTT
GAGGATCTTCAACTGGAGCGGATCAATGTCTACTACAACCGAAGCTTCCG
GTGGAAGGTACGTGCCTCGGGCTGTTCTCATGGATCTTGAACCCGGTACC
ATGGGA