CF504111 | Citrus Genome Database

Overview


Name	CF504111
Unique Name	CF504111
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	256

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB6_ORYSJ (Tubulin beta-6 chain OS=Oryza sativa subsp. japonica GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.511e-25
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRG 140
            MREILHIQGGQCGNQIGSKFWEV+CDEHG+DPTG+Y G
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAG 38

HSP 2 Score: 41.2022 bits (95), Expect = 1.511e-25
Identity = 19/21 (90.48%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EAS GR+VPRAVLMDLEPGTM
Sbjct:   53 EASCGRFVPRAVLMDLEPGTM 73

HSP 3 Score: 31.187 bits (69), Expect = 1.511e-25
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLER+NVYYN +
Sbjct:   38 GTSDLQLERVNVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB6_ARATH (Tubulin beta-6 chain OS=Arabidopsis thaliana GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.960e-25
Identity = 34/39 (87.18%), Postives = 38/39 (97.44%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREILHIQGGQCGNQIGSKFWEV+CDEHG+DPTG+Y G+
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGN 39

HSP 2 Score: 42.3578 bits (98), Expect = 1.960e-25
Identity = 19/21 (90.48%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EAS GRYVPRA+LMDLEPGTM
Sbjct:   53 EASCGRYVPRAILMDLEPGTM 73

HSP 3 Score: 30.0314 bits (66), Expect = 1.960e-25
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLER+NVYYN +
Sbjct:   38 GNSDLQLERVNVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_CICAR (Tubulin beta chain OS=Cicer arietinum GN=TUBB PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.960e-25
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDRG 149
            MREILH+QGGQCGNQIGSKFWEVICDEHG+D TGKY  + G
Sbjct:    1 MREILHVQGGQCGNQIGSKFWEVICDEHGIDQTGKYISEGG 41

HSP 2 Score: 46.2098 bits (108), Expect = 1.960e-25
Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EASGGRYVPRAVLMDLEPGTM
Sbjct:   55 EASGGRYVPRAVLMDLEPGTM 75

HSP 3 Score: 28.4906 bits (62), Expect = 1.960e-25
Identity = 12/17 (70.59%), Postives = 13/17 (76.47%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  D QLERINVYYN +
Sbjct:   40 GGSDTQLERINVYYNEA 56

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB1_PEA (Tubulin beta-1 chain OS=Pisum sativum GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.960e-25
Identity = 32/39 (82.05%), Postives = 37/39 (94.87%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MR+ILHIQGGQCGNQIG+KFWEV+C EHG+DPTG+Y GD
Sbjct:    1 MRQILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGD 39

HSP 2 Score: 44.669 bits (104), Expect = 1.960e-25
Identity = 20/21 (95.24%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EASGGR+VPRAVLMDLEPGTM
Sbjct:   53 EASGGRFVPRAVLMDLEPGTM 73

HSP 3 Score: 30.4166 bits (67), Expect = 1.960e-25
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = 1

Query:  142 TGVEDLQLERINVYYNRS 195
            TG  DLQLERI+VYYN +
Sbjct:   37 TGDSDLQLERIDVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB2_ARATH (Tubulin beta-2/beta-3 chain OS=Arabidopsis thaliana GN=TUBB2 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.543e-25
Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREILHIQGGQCGNQIG+KFWEV+C EHG+DPTG+Y GD
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGD 39

HSP 2 Score: 41.2022 bits (95), Expect = 2.543e-25
Identity = 19/21 (90.48%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EAS GR+VPRAVLMDLEPGTM
Sbjct:   53 EASCGRFVPRAVLMDLEPGTM 73

HSP 3 Score: 32.3426 bits (72), Expect = 2.543e-25
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = 1

Query:  142 TGVEDLQLERINVYYNRS 195
            TG  DLQLERINVYYN +
Sbjct:   37 TGDSDLQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB5_WHEAT (Tubulin beta-5 chain OS=Triticum aestivum GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.543e-25
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRG 140
            MREILHIQGGQCGNQIGSKFWEV+CDEHG+DPTG+Y G
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVG 38

HSP 2 Score: 41.2022 bits (95), Expect = 2.543e-25
Identity = 19/21 (90.48%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EAS GR+VPRAVLMDLEPGTM
Sbjct:   53 EASCGRFVPRAVLMDLEPGTM 73

HSP 3 Score: 31.187 bits (69), Expect = 2.543e-25
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLER+NVYYN +
Sbjct:   38 GTSDLQLERVNVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB5_MAIZE (Tubulin beta-5 chain OS=Zea mays GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.543e-25
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRG 140
            MREILHIQGGQCGNQIGSKFWEV+CDEHG+DPTG+Y G
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVG 38

HSP 2 Score: 41.2022 bits (95), Expect = 2.543e-25
Identity = 19/21 (90.48%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EAS GR+VPRAVLMDLEPGTM
Sbjct:   53 EASCGRFVPRAVLMDLEPGTM 73

HSP 3 Score: 31.187 bits (69), Expect = 2.543e-25
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLER+NVYYN +
Sbjct:   38 GTSDLQLERVNVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB4_ELEIN (Tubulin beta-4 chain OS=Eleusine indica GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.543e-25
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRG 140
            MREILHIQGGQCGNQIGSKFWEV+CDEHG+DPTG+Y G
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVG 38

HSP 2 Score: 41.2022 bits (95), Expect = 2.543e-25
Identity = 19/21 (90.48%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EAS GR+VPRAVLMDLEPGTM
Sbjct:   53 EASCGRFVPRAVLMDLEPGTM 73

HSP 3 Score: 31.187 bits (69), Expect = 2.543e-25
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLER+NVYYN +
Sbjct:   38 GTSDLQLERVNVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB1_WHEAT (Tubulin beta-1 chain OS=Triticum aestivum GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.543e-25
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRG 140
            MREILHIQGGQCGNQIGSKFWEV+CDEHG+DPTG+Y G
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVG 38

HSP 2 Score: 41.2022 bits (95), Expect = 2.543e-25
Identity = 19/21 (90.48%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EAS GR+VPRAVLMDLEPGTM
Sbjct:   53 EASCGRFVPRAVLMDLEPGTM 73

HSP 3 Score: 31.187 bits (69), Expect = 2.543e-25
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLER+NVYYN +
Sbjct:   38 GTSDLQLERVNVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB1_ORYSJ (Tubulin beta-1 chain OS=Oryza sativa subsp. japonica GN=TUBB1 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.543e-25
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRG 140
            MREILHIQGGQCGNQIGSKFWEV+CDEHG+DPTG+Y G
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVG 38

HSP 2 Score: 41.2022 bits (95), Expect = 2.543e-25
Identity = 19/21 (90.48%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EAS GR+VPRAVLMDLEPGTM
Sbjct:   53 EASCGRFVPRAVLMDLEPGTM 73

HSP 3 Score: 31.187 bits (69), Expect = 2.543e-25
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLER+NVYYN +
Sbjct:   38 GTSDLQLERVNVYYNEA 54

The following BLAST results are available for this feature:

BLAST of CF504111 vs. ExPASy Swiss-Prot

BLAST of CF504111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219


Match Name	E-value	Identity	Description
TBB6_ORYSJ	1.511e-25	89.47	Tubulin beta-6 chain OS=Oryza sativa subsp. japoni...	[more]
TBB6_ARATH	1.960e-25	87.18	Tubulin beta-6 chain OS=Arabidopsis thaliana GN=TU...	[more]
TBB_CICAR	1.960e-25	82.93	Tubulin beta chain OS=Cicer arietinum GN=TUBB PE=2...	[more]
TBB1_PEA	1.960e-25	82.05	Tubulin beta-1 chain OS=Pisum sativum GN=TUBB1 PE=...	[more]
TBB2_ARATH	2.543e-25	84.62	Tubulin beta-2/beta-3 chain OS=Arabidopsis thalian...	[more]
TBB5_WHEAT	2.543e-25	89.47	Tubulin beta-5 chain OS=Triticum aestivum GN=TUBB5...	[more]
TBB5_MAIZE	2.543e-25	89.47	Tubulin beta-5 chain OS=Zea mays GN=TUBB5 PE=2 SV=...	[more]
TBB4_ELEIN	2.543e-25	89.47	Tubulin beta-4 chain OS=Eleusine indica GN=TUBB4 P...	[more]
TBB1_WHEAT	2.543e-25	89.47	Tubulin beta-1 chain OS=Triticum aestivum GN=TUBB1...	[more]
TBB1_ORYSJ	2.543e-25	89.47	Tubulin beta-1 chain OS=Oryza sativa subsp. japoni...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_119000-599 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_A02 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF504111 ID=CF504111; Name=CF504111; organism=Citrus sinensis; type=EST; length=256bp
CTTCGTTTCCTTTCCGTTTGAGATAAATGAGAGAGATCTTGCACATTCAA
GGAGGCCAATGCGGCAACCAAATCGGATCCAAATTCTGGGAAGTCATTTG
CGACGAGCATGGCGTGGACCCCACGGGGAAGTATAGAGGTGACCGGGGTT
GAGGATCTTCAACTGGAGCGGATCAATGTCTACTACAACCGAAGCTTCCG
GTGGAAGGTACGTGCCTCGGGCTGTTCTCATGGATCTTGAACCCGGTACC
ATGGGA