CF504111 | Citrus Genome Database

Overview


Name	CF504111
Unique Name	CF504111
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	256

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_PHYCI (Tubulin beta chain OS=Phytophthora cinnamomi PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.544e-25
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MRE++HIQGGQCGNQIG+KFWEVI DEHGVDPTG Y GD
Sbjct:    1 MRELVHIQGGQCGNQIGAKFWEVISDEHGVDPTGSYHGD 39

HSP 2 Score: 44.669 bits (104), Expect = 2.544e-25
Identity = 19/21 (90.48%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GGRYVPRA+LMDLEPGTM
Sbjct:   53 EATGGRYVPRAILMDLEPGTM 73

HSP 3 Score: 31.187 bits (69), Expect = 2.544e-25
Identity = 16/25 (64.00%), Postives = 17/25 (68.00%), Query Frame = 1

Query:  121 PRGSIEVTGVEDLQLERINVYYNRS 195
            P GS    G  DLQLERINVYYN +
Sbjct:   32 PTGSYH--GDSDLQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_EUPCR (Tubulin beta chain OS=Euplotes crassus PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 3.300e-25
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+H+QGGQCGNQIG+KFWEVI DEHGVDPTG Y GD
Sbjct:    1 MREIVHVQGGQCGNQIGAKFWEVISDEHGVDPTGTYHGD 39

HSP 2 Score: 45.0542 bits (105), Expect = 3.300e-25
Identity = 20/21 (95.24%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GGRYVPRAVLMDLEPGTM
Sbjct:   53 EATGGRYVPRAVLMDLEPGTM 73

HSP 3 Score: 30.4166 bits (67), Expect = 3.300e-25
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERINVYYN +
Sbjct:   38 GDSDLQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB1_CYAPA (Tubulin beta-1 chain OS=Cyanophora paradoxa GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 3.300e-25
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+H+QGGQCGNQIG+KFWEVI DEHGVDPTG Y GD
Sbjct:    1 MREIVHVQGGQCGNQIGAKFWEVISDEHGVDPTGTYHGD 39

HSP 2 Score: 45.0542 bits (105), Expect = 3.300e-25
Identity = 20/21 (95.24%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GGRYVPRAVLMDLEPGTM
Sbjct:   53 EATGGRYVPRAVLMDLEPGTM 73

HSP 3 Score: 30.4166 bits (67), Expect = 3.300e-25
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERINVYYN +
Sbjct:   38 GDSDLQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB2_MAIZE (Tubulin beta-2 chain OS=Zea mays GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.301e-25
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRG 140
            MREILHIQGGQCGNQIGSKFWEV+CDEHG+DPTG+Y G
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYMG 38

HSP 2 Score: 41.2022 bits (95), Expect = 3.301e-25
Identity = 19/21 (90.48%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EAS GR+VPRAVLMDLEPGTM
Sbjct:   53 EASCGRFVPRAVLMDLEPGTM 73

HSP 3 Score: 30.0314 bits (66), Expect = 3.301e-25
Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  D+QLER+NVYYN +
Sbjct:   38 GTSDVQLERVNVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_STYLE (Tubulin beta chain OS=Stylonychia lemnae GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 3.301e-25
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQGGQCGNQIG+KFWEVI DEHG+DPTG Y GD
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGD 39

HSP 2 Score: 45.0542 bits (105), Expect = 3.301e-25
Identity = 20/21 (95.24%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GGRYVPRAVLMDLEPGTM
Sbjct:   53 EATGGRYVPRAVLMDLEPGTM 73

HSP 3 Score: 30.4166 bits (67), Expect = 3.301e-25
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERINVYYN +
Sbjct:   38 GDSDLQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_TETTH (Tubulin beta chain OS=Tetrahymena thermophila GN=BTU1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.282e-25
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQGGQCGNQIG+KFWEVI DEHG+DPTG Y GD
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGD 39

HSP 2 Score: 44.669 bits (104), Expect = 4.282e-25
Identity = 19/21 (90.48%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GGRYVPRA+LMDLEPGTM
Sbjct:   53 EATGGRYVPRAILMDLEPGTM 73

HSP 3 Score: 30.4166 bits (67), Expect = 4.282e-25
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERINVYYN +
Sbjct:   38 GDSDLQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_TETPY (Tubulin beta chain OS=Tetrahymena pyriformis GN=BETA-TT1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.282e-25
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQGGQCGNQIG+KFWEVI DEHG+DPTG Y GD
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGD 39

HSP 2 Score: 44.669 bits (104), Expect = 4.282e-25
Identity = 19/21 (90.48%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GGRYVPRA+LMDLEPGTM
Sbjct:   53 EATGGRYVPRAILMDLEPGTM 73

HSP 3 Score: 30.4166 bits (67), Expect = 4.282e-25
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERINVYYN +
Sbjct:   38 GDSDLQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB1_PARTE (Tubulin beta chain OS=Paramecium tetraurelia GN=bPT2 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.282e-25
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQGGQCGNQIG+KFWEVI DEHG+DPTG Y GD
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGD 39

HSP 2 Score: 44.669 bits (104), Expect = 4.282e-25
Identity = 19/21 (90.48%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GGRYVPRA+LMDLEPGTM
Sbjct:   53 EATGGRYVPRAILMDLEPGTM 73

HSP 3 Score: 30.4166 bits (67), Expect = 4.282e-25
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERINVYYN +
Sbjct:   38 GDSDLQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB2_DAUCA (Tubulin beta-2 chain OS=Daucus carota GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 5.556e-25
Identity = 32/35 (91.43%), Postives = 35/35 (100.00%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGK 131
            MREILHIQGGQCGNQIGSKFWEV+CDEHG+DPTG+
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGQ 35

HSP 2 Score: 46.2098 bits (108), Expect = 5.556e-25
Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EASGGRYVPRAVLMDLEPGTM
Sbjct:   53 EASGGRYVPRAVLMDLEPGTM 73

HSP 3 Score: 29.261 bits (64), Expect = 5.556e-25
Identity = 12/20 (60.00%), Postives = 15/20 (75.00%), Query Frame = 1

Query:  136 EVTGVEDLQLERINVYYNRS 195
            +V    DLQL+RINVYYN +
Sbjct:   35 QVLSESDLQLDRINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB3_GOSHI (Tubulin beta-3 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.561e-25
Identity = 33/38 (86.84%), Postives = 37/38 (97.37%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRG 140
            MREILH+QGGQCGNQIGSKFWEV+CDEHG+DPTG+Y G
Sbjct:    1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIG 38

HSP 2 Score: 41.2022 bits (95), Expect = 5.561e-25
Identity = 19/21 (90.48%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EAS GR+VPRAVLMDLEPGTM
Sbjct:   53 EASCGRFVPRAVLMDLEPGTM 73

HSP 3 Score: 30.4166 bits (67), Expect = 5.561e-25
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLER+NVYYN +
Sbjct:   38 GSSDLQLERVNVYYNEA 54

The following BLAST results are available for this feature:

BLAST of CF504111 vs. ExPASy Swiss-Prot

BLAST of CF504111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219


Match Name	E-value	Identity	Description
TBB_PHYCI	2.544e-25	84.62	Tubulin beta chain OS=Phytophthora cinnamomi PE=3 ...	[more]
TBB_EUPCR	3.300e-25	84.62	Tubulin beta chain OS=Euplotes crassus PE=3 SV=1	[more]
TBB1_CYAPA	3.300e-25	84.62	Tubulin beta-1 chain OS=Cyanophora paradoxa GN=TUB...	[more]
TBB2_MAIZE	3.301e-25	89.47	Tubulin beta-2 chain OS=Zea mays GN=TUBB2 PE=2 SV=...	[more]
TBB_STYLE	3.301e-25	84.62	Tubulin beta chain OS=Stylonychia lemnae GN=TUBB1 ...	[more]
TBB_TETTH	4.282e-25	84.62	Tubulin beta chain OS=Tetrahymena thermophila GN=B...	[more]
TBB_TETPY	4.282e-25	84.62	Tubulin beta chain OS=Tetrahymena pyriformis GN=BE...	[more]
TBB1_PARTE	4.282e-25	84.62	Tubulin beta chain OS=Paramecium tetraurelia GN=bP...	[more]
TBB2_DAUCA	5.556e-25	91.43	Tubulin beta-2 chain OS=Daucus carota GN=TUBB2 PE=...	[more]
TBB3_GOSHI	5.561e-25	86.84	Tubulin beta-3 chain OS=Gossypium hirsutum PE=2 SV...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_119000-599 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_A02 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF504111 ID=CF504111; Name=CF504111; organism=Citrus sinensis; type=EST; length=256bp
CTTCGTTTCCTTTCCGTTTGAGATAAATGAGAGAGATCTTGCACATTCAA
GGAGGCCAATGCGGCAACCAAATCGGATCCAAATTCTGGGAAGTCATTTG
CGACGAGCATGGCGTGGACCCCACGGGGAAGTATAGAGGTGACCGGGGTT
GAGGATCTTCAACTGGAGCGGATCAATGTCTACTACAACCGAAGCTTCCG
GTGGAAGGTACGTGCCTCGGGCTGTTCTCATGGATCTTGAACCCGGTACC
ATGGGA