CF504111 | Citrus Genome Database

Overview


Name	CF504111
Unique Name	CF504111
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	256

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_EUPOC (Tubulin beta chain OS=Euplotes octocarinatus PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 9.353e-25
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+H+QGGQCGNQIG+KFWEVI DEHGV+PTG Y GD
Sbjct:    1 MREIVHVQGGQCGNQIGAKFWEVISDEHGVEPTGAYHGD 39

HSP 2 Score: 45.0542 bits (105), Expect = 9.353e-25
Identity = 20/21 (95.24%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GGRYVPRAVLMDLEPGTM
Sbjct:   53 EATGGRYVPRAVLMDLEPGTM 73

HSP 3 Score: 30.4166 bits (67), Expect = 9.353e-25
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERINVYYN +
Sbjct:   38 GDSDLQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_CHLIN (Tubulin beta chain OS=Chlamydomonas incerta GN=TUBB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.213e-24
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQGGQCGNQIG+KFWEV+ DEHGVDPTG Y GD
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVVSDEHGVDPTGTYHGD 39

HSP 2 Score: 44.669 bits (104), Expect = 1.213e-24
Identity = 19/21 (90.48%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GGRYVPRA+LMDLEPGTM
Sbjct:   53 EATGGRYVPRAILMDLEPGTM 73

HSP 3 Score: 28.8758 bits (63), Expect = 1.213e-24
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERINVY+N +
Sbjct:   38 GDSDLQLERINVYFNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_NAEGR (Tubulin beta chain OS=Naegleria gruberi PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.573e-24
Identity = 33/39 (84.62%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQ GQCGNQIG+KFWEVI DEHGVDPTG Y GD
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGVDPTGAYHGD 39

HSP 2 Score: 44.669 bits (104), Expect = 1.573e-24
Identity = 19/21 (90.48%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GGRYVPRA+LMDLEPGTM
Sbjct:   53 EATGGRYVPRAILMDLEPGTM 73

HSP 3 Score: 30.4166 bits (67), Expect = 1.573e-24
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERINVYYN +
Sbjct:   38 GDSDLQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB4_OOMCK (Tubulin beta-4 chain OS=Oomycete-like sp. (strain MacKay2000) GN=TUBB4 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.573e-24
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQGGQCG+QIG+KFWEVI DEHG+DPTG Y GD
Sbjct:    1 MREIVHIQGGQCGDQIGAKFWEVISDEHGIDPTGTYNGD 39

HSP 2 Score: 45.0542 bits (105), Expect = 1.573e-24
Identity = 20/21 (95.24%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GGRYVPRAVLMDLEPGTM
Sbjct:   53 EATGGRYVPRAVLMDLEPGTM 73

HSP 3 Score: 30.0314 bits (66), Expect = 1.573e-24
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLER+NVYYN +
Sbjct:   38 GDSDLQLERVNVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB8_MAIZE (Tubulin beta-8 chain OS=Zea mays GN=TUBB8 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.574e-24
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRG 140
            MREILHIQGGQCGNQIGSKFWEV+CDEHG+DPTG+Y G
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVG 38

HSP 2 Score: 38.5058 bits (88), Expect = 1.574e-24
Identity = 18/21 (85.71%), Postives = 19/21 (90.48%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EAS GR+VP AVLMDLEPGTM
Sbjct:   53 EASCGRFVPGAVLMDLEPGTM 73

HSP 3 Score: 31.187 bits (69), Expect = 1.574e-24
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLER+NVYYN +
Sbjct:   38 GTSDLQLERVNVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_CHLRE (Tubulin beta-1/beta-2 chain OS=Chlamydomonas reinhardtii GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.574e-24
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQGGQCGNQIG+KFWEV+ DEHG+DPTG Y GD
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVVSDEHGIDPTGTYHGD 39

HSP 2 Score: 44.669 bits (104), Expect = 1.574e-24
Identity = 19/21 (90.48%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GGRYVPRA+LMDLEPGTM
Sbjct:   53 EATGGRYVPRAILMDLEPGTM 73

HSP 3 Score: 28.8758 bits (63), Expect = 1.574e-24
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERINVY+N +
Sbjct:   38 GDSDLQLERINVYFNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB1_VOLCA (Tubulin beta chain OS=Volvox carteri GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.574e-24
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQGGQCGNQIG+KFWEV+ DEHG+DPTG Y GD
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVVSDEHGIDPTGTYHGD 39

HSP 2 Score: 44.669 bits (104), Expect = 1.574e-24
Identity = 19/21 (90.48%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GGRYVPRA+LMDLEPGTM
Sbjct:   53 EATGGRYVPRAILMDLEPGTM 73

HSP 3 Score: 28.8758 bits (63), Expect = 1.574e-24
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERINVY+N +
Sbjct:   38 GDSDLQLERINVYFNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB1_ANEPH (Tubulin beta-1 chain OS=Anemia phyllitidis GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.042e-24
Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREILH+QGGQCGNQIG+KFWEV+C EHG+DPTG YRGD
Sbjct:    1 MREILHVQGGQCGNQIGAKFWEVVCTEHGIDPTGTYRGD 39

HSP 2 Score: 42.743 bits (99), Expect = 2.042e-24
Identity = 20/21 (95.24%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EAS GRYVPRAVLMDLEPGTM
Sbjct:   53 EASCGRYVPRAVLMDLEPGTM 73

HSP 3 Score: 26.5646 bits (57), Expect = 2.042e-24
Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  + QLER+NVYYN +
Sbjct:   38 GDSETQLERVNVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_THAWE (Tubulin beta chain OS=Thalassiosira weissflogii PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.042e-24
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQGGQCGNQIG+KFWEV+ DEHGVDPTG Y GD
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVMSDEHGVDPTGTYHGD 39

HSP 2 Score: 44.669 bits (104), Expect = 2.042e-24
Identity = 19/21 (90.48%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GGRYVPRA+LMDLEPGTM
Sbjct:   53 EATGGRYVPRAILMDLEPGTM 73

HSP 3 Score: 28.8758 bits (63), Expect = 2.042e-24
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERINVY+N +
Sbjct:   38 GDSDLQLERINVYFNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB1_NOTCO (Tubulin beta-1 chain OS=Notothenia coriiceps neglecta GN=tubb1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.436e-24
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+H+Q GQCGNQIGSKFWEVI DEHG+DPTG Y GD
Sbjct:    1 MREIVHLQAGQCGNQIGSKFWEVISDEHGIDPTGSYHGD 39

HSP 2 Score: 43.5134 bits (101), Expect = 3.436e-24
Identity = 19/21 (90.48%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EASGG+YVPRAVL+DLEPGTM
Sbjct:   53 EASGGKYVPRAVLVDLEPGTM 73

HSP 3 Score: 30.0314 bits (66), Expect = 3.436e-24
Identity = 15/25 (60.00%), Postives = 17/25 (68.00%), Query Frame = 1

Query:  121 PRGSIEVTGVEDLQLERINVYYNRS 195
            P GS    G  DLQL+RINVYYN +
Sbjct:   32 PTGSYH--GDSDLQLDRINVYYNEA 54

The following BLAST results are available for this feature:

BLAST of CF504111 vs. ExPASy Swiss-Prot

BLAST of CF504111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219


Match Name	E-value	Identity	Description
TBB_EUPOC	9.353e-25	82.05	Tubulin beta chain OS=Euplotes octocarinatus PE=3 ...	[more]
TBB_CHLIN	1.213e-24	84.62	Tubulin beta chain OS=Chlamydomonas incerta GN=TUB...	[more]
TBB_NAEGR	1.573e-24	84.62	Tubulin beta chain OS=Naegleria gruberi PE=2 SV=1	[more]
TBB4_OOMCK	1.573e-24	82.05	Tubulin beta-4 chain OS=Oomycete-like sp. (strain ...	[more]
TBB8_MAIZE	1.574e-24	89.47	Tubulin beta-8 chain OS=Zea mays GN=TUBB8 PE=2 SV=...	[more]
TBB_CHLRE	1.574e-24	82.05	Tubulin beta-1/beta-2 chain OS=Chlamydomonas reinh...	[more]
TBB1_VOLCA	1.574e-24	82.05	Tubulin beta chain OS=Volvox carteri GN=TUBB1 PE=3...	[more]
TBB1_ANEPH	2.042e-24	84.62	Tubulin beta-1 chain OS=Anemia phyllitidis GN=TUBB...	[more]
TBB_THAWE	2.042e-24	84.62	Tubulin beta chain OS=Thalassiosira weissflogii PE...	[more]
TBB1_NOTCO	3.436e-24	82.05	Tubulin beta-1 chain OS=Notothenia coriiceps negle...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_119000-599 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_A02 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF504111 ID=CF504111; Name=CF504111; organism=Citrus sinensis; type=EST; length=256bp
CTTCGTTTCCTTTCCGTTTGAGATAAATGAGAGAGATCTTGCACATTCAA
GGAGGCCAATGCGGCAACCAAATCGGATCCAAATTCTGGGAAGTCATTTG
CGACGAGCATGGCGTGGACCCCACGGGGAAGTATAGAGGTGACCGGGGTT
GAGGATCTTCAACTGGAGCGGATCAATGTCTACTACAACCGAAGCTTCCG
GTGGAAGGTACGTGCCTCGGGCTGTTCTCATGGATCTTGAACCCGGTACC
ATGGGA