CF504111 | Citrus Genome Database

Overview


Name	CF504111
Unique Name	CF504111
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	256

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB3_OOMCK (Tubulin beta-3 chain OS=Oomycete-like sp. (strain MacKay2000) GN=TUBB3 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.457e-24
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQ GQCGNQIG+KFW+VI DEHGVDPTG Y+GD
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWQVISDEHGVDPTGTYKGD 39

HSP 2 Score: 43.5134 bits (101), Expect = 4.457e-24
Identity = 19/21 (90.48%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GGRYVPRAVL+DLEPGTM
Sbjct:   53 EATGGRYVPRAVLIDLEPGTM 73

HSP 3 Score: 30.4166 bits (67), Expect = 4.457e-24
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERINVYYN +
Sbjct:   38 GDSDLQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB1_ECHMU (Tubulin beta-1 chain OS=Echinococcus multilocularis GN=TUB-1 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.781e-24
Identity = 34/39 (87.18%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQ GQCGNQIGSKFWEVI DEHGVDPTG Y GD
Sbjct:    1 MREIVHIQAGQCGNQIGSKFWEVISDEHGVDPTGSYHGD 39

HSP 2 Score: 42.3578 bits (98), Expect = 5.781e-24
Identity = 18/22 (81.82%), Postives = 21/22 (95.45%), Query Frame = 2

Query:  188 TEASGGRYVPRAVLMDLEPGTM 253
            +EASGG+YVPR VL+DLEPGTM
Sbjct:   52 SEASGGKYVPRCVLVDLEPGTM 73

HSP 3 Score: 29.261 bits (64), Expect = 5.781e-24
Identity = 15/25 (60.00%), Postives = 17/25 (68.00%), Query Frame = 1

Query:  121 PRGSIEVTGVEDLQLERINVYYNRS 195
            P GS    G  DLQLERINVYY+ +
Sbjct:   32 PTGSYH--GDSDLQLERINVYYSEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB8_ORYSJ (Tubulin beta-8 chain OS=Oryza sativa subsp. japonica GN=TUBB8 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.782e-24
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRG 140
            MREILHIQGGQCGNQIG+KFWEVIC EHGVDPTG Y G
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICGEHGVDPTGTYTG 38

HSP 2 Score: 44.2838 bits (103), Expect = 5.782e-24
Identity = 20/21 (95.24%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EASGGR+VPRAVLMDLEPGTM
Sbjct:   53 EASGGRHVPRAVLMDLEPGTM 73

HSP 3 Score: 26.9498 bits (58), Expect = 5.782e-24
Identity = 11/18 (61.11%), Postives = 13/18 (72.22%), Query Frame = 1

Query:  142 TGVEDLQLERINVYYNRS 195
            TG    QLERINVY+N +
Sbjct:   37 TGTSPQQLERINVYFNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB5_ECTVR (Tubulin beta-5 chain OS=Ectocarpus variabilis GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.782e-24
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+H+Q GQCGNQIGSKFWEVI DEHG+DPTG Y GD
Sbjct:    1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIDPTGSYHGD 39

HSP 2 Score: 44.669 bits (104), Expect = 5.782e-24
Identity = 19/21 (90.48%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GGRYVPRA+LMDLEPGTM
Sbjct:   53 EATGGRYVPRAILMDLEPGTM 73

HSP 3 Score: 27.7202 bits (60), Expect = 5.782e-24
Identity = 14/25 (56.00%), Postives = 16/25 (64.00%), Query Frame = 1

Query:  121 PRGSIEVTGVEDLQLERINVYYNRS 195
            P GS    G  DLQLERIN Y+N +
Sbjct:   32 PTGSYH--GDSDLQLERINCYFNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB2_ECHMU (Tubulin beta-2 chain OS=Echinococcus multilocularis GN=TUB-2 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.782e-24
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGD 39

HSP 2 Score: 43.1282 bits (100), Expect = 5.782e-24
Identity = 18/21 (85.71%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EASGG+YVPRA+L+DLEPGTM
Sbjct:   53 EASGGKYVPRAILVDLEPGTM 73

HSP 3 Score: 30.4166 bits (67), Expect = 5.782e-24
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERINVYYN +
Sbjct:   38 GDSDLQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_TRITR (Tubulin beta chain OS=Trichuris trichiura PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.783e-24
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGD 39

HSP 2 Score: 43.1282 bits (100), Expect = 5.783e-24
Identity = 18/21 (85.71%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EASGG+YVPRA+L+DLEPGTM
Sbjct:   53 EASGGKYVPRAILVDLEPGTM 73

HSP 3 Score: 30.4166 bits (67), Expect = 5.783e-24
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERINVYYN +
Sbjct:   38 GDSDLQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB1_MANSE (Tubulin beta-1 chain OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.500e-24
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQ GQCGNQIG+KFWE+I DEHG+DPTG Y GD
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGD 39

HSP 2 Score: 43.1282 bits (100), Expect = 7.500e-24
Identity = 18/21 (85.71%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EASGG+YVPRA+L+DLEPGTM
Sbjct:   53 EASGGKYVPRAILVDLEPGTM 73

HSP 3 Score: 30.4166 bits (67), Expect = 7.500e-24
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERINVYYN +
Sbjct:   38 GDSDLQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB4_ARATH (Tubulin beta-4 chain OS=Arabidopsis thaliana GN=TUBB4 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.502e-24
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREILHIQGGQCGNQIG+KFWEVICDEHG+D TG+Y GD
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGD 39

HSP 2 Score: 45.0542 bits (105), Expect = 7.502e-24
Identity = 20/21 (95.24%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EASGG+YVPRAVLMDLEPGTM
Sbjct:   53 EASGGKYVPRAVLMDLEPGTM 73

HSP 3 Score: 24.6386 bits (52), Expect = 7.502e-24
Identity = 10/20 (50.00%), Postives = 14/20 (70.00%), Query Frame = 1

Query:  136 EVTGVEDLQLERINVYYNRS 195
            +  G   LQLERI+VY+N +
Sbjct:   35 QYVGDSPLQLERIDVYFNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB1_PHYPO (Tubulin beta-1 chain OS=Physarum polycephalum GN=BETA PE=1 SV=4)

HSP 1 Score: 76.2554 bits (186), Expect = 9.713e-24
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y G+
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGE 39

HSP 2 Score: 42.3578 bits (98), Expect = 9.713e-24
Identity = 18/21 (85.71%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GG+YVPRAVL+DLEPGTM
Sbjct:   53 EATGGKYVPRAVLVDLEPGTM 73

HSP 3 Score: 31.5722 bits (70), Expect = 9.713e-24
Identity = 16/25 (64.00%), Postives = 17/25 (68.00%), Query Frame = 1

Query:  121 PRGSIEVTGVEDLQLERINVYYNRS 195
            P GS    G  DLQLERINVYYN +
Sbjct:   32 PTGSYH--GESDLQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_TOXGO (Tubulin beta chain OS=Toxoplasma gondii PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 9.726e-24
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+H+QGGQCGNQIG+KFWEVI DEHG+DPTG Y GD
Sbjct:    1 MREIVHVQGGQCGNQIGAKFWEVISDEHGIDPTGTYCGD 39

HSP 2 Score: 43.1282 bits (100), Expect = 9.726e-24
Identity = 18/21 (85.71%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GGR+VPRA+LMDLEPGTM
Sbjct:   53 EATGGRFVPRAILMDLEPGTM 73

HSP 3 Score: 28.8758 bits (63), Expect = 9.726e-24
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERINV+YN +
Sbjct:   38 GDSDLQLERINVFYNEA 54

The following BLAST results are available for this feature:

BLAST of CF504111 vs. ExPASy Swiss-Prot

BLAST of CF504111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219


Match Name	E-value	Identity	Description
TBB3_OOMCK	4.457e-24	82.05	Tubulin beta-3 chain OS=Oomycete-like sp. (strain ...	[more]
TBB1_ECHMU	5.781e-24	87.18	Tubulin beta-1 chain OS=Echinococcus multiloculari...	[more]
TBB8_ORYSJ	5.782e-24	89.47	Tubulin beta-8 chain OS=Oryza sativa subsp. japoni...	[more]
TBB5_ECTVR	5.782e-24	82.05	Tubulin beta-5 chain OS=Ectocarpus variabilis GN=T...	[more]
TBB2_ECHMU	5.782e-24	82.05	Tubulin beta-2 chain OS=Echinococcus multiloculari...	[more]
TBB_TRITR	5.783e-24	82.05	Tubulin beta chain OS=Trichuris trichiura PE=3 SV=...	[more]
TBB1_MANSE	7.500e-24	79.49	Tubulin beta-1 chain OS=Manduca sexta PE=2 SV=1	[more]
TBB4_ARATH	7.502e-24	87.18	Tubulin beta-4 chain OS=Arabidopsis thaliana GN=TU...	[more]
TBB1_PHYPO	9.713e-24	79.49	Tubulin beta-1 chain OS=Physarum polycephalum GN=B...	[more]
TBB_TOXGO	9.726e-24	82.05	Tubulin beta chain OS=Toxoplasma gondii PE=3 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_119000-599 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_A02 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF504111 ID=CF504111; Name=CF504111; organism=Citrus sinensis; type=EST; length=256bp
CTTCGTTTCCTTTCCGTTTGAGATAAATGAGAGAGATCTTGCACATTCAA
GGAGGCCAATGCGGCAACCAAATCGGATCCAAATTCTGGGAAGTCATTTG
CGACGAGCATGGCGTGGACCCCACGGGGAAGTATAGAGGTGACCGGGGTT
GAGGATCTTCAACTGGAGCGGATCAATGTCTACTACAACCGAAGCTTCCG
GTGGAAGGTACGTGCCTCGGGCTGTTCTCATGGATCTTGAACCCGGTACC
ATGGGA