CF504111 | Citrus Genome Database

Overview


Name	CF504111
Unique Name	CF504111
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	256

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB8_ARATH (Tubulin beta-8 chain OS=Arabidopsis thaliana GN=TUBB8 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.262e-23
Identity = 31/39 (79.49%), Postives = 37/39 (94.87%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREILHIQGGQCGNQIG+KFWEV+C EHG+D TG+Y+G+
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGE 39

HSP 2 Score: 41.2022 bits (95), Expect = 1.262e-23
Identity = 19/21 (90.48%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EAS GR+VPRAVLMDLEPGTM
Sbjct:   53 EASCGRFVPRAVLMDLEPGTM 73

HSP 3 Score: 30.4166 bits (67), Expect = 1.262e-23
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLER+NVYYN +
Sbjct:   38 GENDLQLERVNVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_GIALA (Tubulin beta chain OS=Giardia lamblia PE=2 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 1.262e-23
Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQ GQCGNQIG+KFWEVI DEHGVDP+G+YRGD
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGVDPSGEYRGD 39

HSP 2 Score: 43.1282 bits (100), Expect = 1.262e-23
Identity = 18/21 (85.71%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GGRYVPRA+L+DLEPGTM
Sbjct:   53 EAAGGRYVPRAILVDLEPGTM 73

HSP 3 Score: 27.7202 bits (60), Expect = 1.262e-23
Identity = 11/20 (55.00%), Postives = 15/20 (75.00%), Query Frame = 1

Query:  136 EVTGVEDLQLERINVYYNRS 195
            E  G  +LQ+ERINVY+N +
Sbjct:   35 EYRGDSELQIERINVYFNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB2_ORYSJ (Tubulin beta-2 chain OS=Oryza sativa subsp. japonica GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.262e-23
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREILHIQGGQCGNQIG+KFWEV+C EHG+D TG+Y GD
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDATGRYDGD 39

HSP 2 Score: 41.2022 bits (95), Expect = 1.262e-23
Identity = 19/21 (90.48%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EAS GR+VPRAVLMDLEPGTM
Sbjct:   53 EASCGRFVPRAVLMDLEPGTM 73

HSP 3 Score: 30.0314 bits (66), Expect = 1.262e-23
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLER+NVYYN +
Sbjct:   38 GDSDLQLERVNVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB1_MAIZE (Tubulin beta-1 chain OS=Zea mays GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.262e-23
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREILHIQGGQCGNQIG+KFWEV+C EHG+D TG+Y GD
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDATGRYGGD 39

HSP 2 Score: 41.2022 bits (95), Expect = 1.262e-23
Identity = 19/21 (90.48%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EAS GR+VPRAVLMDLEPGTM
Sbjct:   53 EASCGRFVPRAVLMDLEPGTM 73

HSP 3 Score: 30.0314 bits (66), Expect = 1.262e-23
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLER+NVYYN +
Sbjct:   38 GDSDLQLERVNVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB4_XENLA (Tubulin beta-4 chain OS=Xenopus laevis GN=tubb4 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.637e-23
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+H+Q GQCGNQIG+KFWEVI DEHG+DPTG Y GD
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGAYHGD 39

HSP 2 Score: 42.3578 bits (98), Expect = 1.637e-23
Identity = 18/21 (85.71%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GG+YVPRAVL+DLEPGTM
Sbjct:   53 EATGGKYVPRAVLVDLEPGTM 73

HSP 3 Score: 30.4166 bits (67), Expect = 1.637e-23
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERINVYYN +
Sbjct:   38 GDSDLQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB3_CHICK (Tubulin beta-3 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.637e-23
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+H+Q GQCGNQIG+KFWEVI DEHG+DPTG Y GD
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGD 39

HSP 2 Score: 42.3578 bits (98), Expect = 1.637e-23
Identity = 18/21 (85.71%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GG+YVPRAVL+DLEPGTM
Sbjct:   53 EATGGKYVPRAVLVDLEPGTM 73

HSP 3 Score: 30.4166 bits (67), Expect = 1.637e-23
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERINVYYN +
Sbjct:   38 GDSDLQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB2_PEA (Tubulin beta-2 chain (Fragment) OS=Pisum sativum GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.637e-23
Identity = 30/37 (81.08%), Postives = 35/37 (94.59%), Query Frame = 3

Query:   33 EILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            EI+HIQGGQCGNQIG+KFWEV+C EHG+DPTG+Y GD
Sbjct:    1 EIVHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYGGD 37

HSP 2 Score: 42.743 bits (99), Expect = 1.637e-23
Identity = 20/21 (95.24%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EAS GRYVPRAVLMDLEPGTM
Sbjct:   51 EASCGRYVPRAVLMDLEPGTM 71

HSP 3 Score: 30.0314 bits (66), Expect = 1.637e-23
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERINVYYN +
Sbjct:   36 GDTDLQLERINVYYNEA 52

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB2C_RAT (Tubulin beta-2C chain OS=Rattus norvegicus GN=Tubb2c PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.637e-23
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+H+Q GQCGNQIG+KFWEVI DEHG+DPTG Y GD
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGD 39

HSP 2 Score: 42.3578 bits (98), Expect = 1.637e-23
Identity = 18/21 (85.71%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GG+YVPRAVL+DLEPGTM
Sbjct:   53 EATGGKYVPRAVLVDLEPGTM 73

HSP 3 Score: 30.4166 bits (67), Expect = 1.637e-23
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERINVYYN +
Sbjct:   38 GDSDLQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB2C_MOUSE (Tubulin beta-2C chain OS=Mus musculus GN=Tubb2c PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.637e-23
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+H+Q GQCGNQIG+KFWEVI DEHG+DPTG Y GD
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGD 39

HSP 2 Score: 42.3578 bits (98), Expect = 1.637e-23
Identity = 18/21 (85.71%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GG+YVPRAVL+DLEPGTM
Sbjct:   53 EATGGKYVPRAVLVDLEPGTM 73

HSP 3 Score: 30.4166 bits (67), Expect = 1.637e-23
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERINVYYN +
Sbjct:   38 GDSDLQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB2C_HUMAN (Tubulin beta-2C chain OS=Homo sapiens GN=TUBB2C PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.637e-23
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+H+Q GQCGNQIG+KFWEVI DEHG+DPTG Y GD
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGD 39

HSP 2 Score: 42.3578 bits (98), Expect = 1.637e-23
Identity = 18/21 (85.71%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GG+YVPRAVL+DLEPGTM
Sbjct:   53 EATGGKYVPRAVLVDLEPGTM 73

HSP 3 Score: 30.4166 bits (67), Expect = 1.637e-23
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERINVYYN +
Sbjct:   38 GDSDLQLERINVYYNEA 54

The following BLAST results are available for this feature:

BLAST of CF504111 vs. ExPASy Swiss-Prot

BLAST of CF504111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219


Match Name	E-value	Identity	Description
TBB8_ARATH	1.262e-23	79.49	Tubulin beta-8 chain OS=Arabidopsis thaliana GN=TU...	[more]
TBB_GIALA	1.262e-23	84.62	Tubulin beta chain OS=Giardia lamblia PE=2 SV=3	[more]
TBB2_ORYSJ	1.262e-23	82.05	Tubulin beta-2 chain OS=Oryza sativa subsp. japoni...	[more]
TBB1_MAIZE	1.262e-23	82.05	Tubulin beta-1 chain OS=Zea mays GN=TUBB1 PE=2 SV=...	[more]
TBB4_XENLA	1.637e-23	79.49	Tubulin beta-4 chain OS=Xenopus laevis GN=tubb4 PE...	[more]
TBB3_CHICK	1.637e-23	79.49	Tubulin beta-3 chain OS=Gallus gallus PE=2 SV=1	[more]
TBB2_PEA	1.637e-23	81.08	Tubulin beta-2 chain (Fragment) OS=Pisum sativum G...	[more]
TBB2C_RAT	1.637e-23	79.49	Tubulin beta-2C chain OS=Rattus norvegicus GN=Tubb...	[more]
TBB2C_MOUSE	1.637e-23	79.49	Tubulin beta-2C chain OS=Mus musculus GN=Tubb2c PE...	[more]
TBB2C_HUMAN	1.637e-23	79.49	Tubulin beta-2C chain OS=Homo sapiens GN=TUBB2C PE...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_119000-599 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_A02 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF504111 ID=CF504111; Name=CF504111; organism=Citrus sinensis; type=EST; length=256bp
CTTCGTTTCCTTTCCGTTTGAGATAAATGAGAGAGATCTTGCACATTCAA
GGAGGCCAATGCGGCAACCAAATCGGATCCAAATTCTGGGAAGTCATTTG
CGACGAGCATGGCGTGGACCCCACGGGGAAGTATAGAGGTGACCGGGGTT
GAGGATCTTCAACTGGAGCGGATCAATGTCTACTACAACCGAAGCTTCCG
GTGGAAGGTACGTGCCTCGGGCTGTTCTCATGGATCTTGAACCCGGTACC
ATGGGA