CF504111 | Citrus Genome Database

Overview


Name	CF504111
Unique Name	CF504111
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	256

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig11134	contig	Csv1_Contig11134:898..1151.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB2C_BOVIN (Tubulin beta-2C chain OS=Bos taurus GN=TUBB2C PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.637e-23
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+H+Q GQCGNQIG+KFWEVI DEHG+DPTG Y GD
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGD 39

HSP 2 Score: 42.3578 bits (98), Expect = 1.637e-23
Identity = 18/21 (85.71%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GG+YVPRAVL+DLEPGTM
Sbjct:   53 EATGGKYVPRAVLVDLEPGTM 73

HSP 3 Score: 30.4166 bits (67), Expect = 1.637e-23
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERINVYYN +
Sbjct:   38 GDSDLQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB1_GADMO (Tubulin beta-1 chain OS=Gadus morhua PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.637e-23
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+H+Q GQCGNQIG+KFWEVI DEHG+DPTG Y GD
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGD 39

HSP 2 Score: 43.5134 bits (101), Expect = 1.637e-23
Identity = 19/21 (90.48%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EASGG+YVPRAVL+DLEPGTM
Sbjct:   53 EASGGKYVPRAVLVDLEPGTM 73

HSP 3 Score: 29.261 bits (64), Expect = 1.637e-23
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQL+RINVYYN +
Sbjct:   38 GDSDLQLDRINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_EIMTE (Tubulin beta chain OS=Eimeria tenella PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.122e-23
Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+H+QGGQCGNQIG+KFWEVI DEHG+ PTG Y+GD
Sbjct:    1 MREIVHVQGGQCGNQIGAKFWEVISDEHGIAPTGTYKGD 39

HSP 2 Score: 45.0542 bits (105), Expect = 2.122e-23
Identity = 20/21 (95.24%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GGRYVPRAVLMDLEPGTM
Sbjct:   53 EATGGRYVPRAVLMDLEPGTM 73

HSP 3 Score: 26.9498 bits (58), Expect = 2.122e-23
Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERI+V+YN +
Sbjct:   38 GDSDLQLERISVFYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_PARLI (Tubulin beta chain OS=Paracentrotus lividus PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.123e-23
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+H+Q GQCGNQIG+KFWEVI DEHG+DPTG Y GD
Sbjct:    1 MREIVHMQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGD 39

HSP 2 Score: 42.3578 bits (98), Expect = 2.123e-23
Identity = 18/21 (85.71%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GG+YVPRAVL+DLEPGTM
Sbjct:   53 EATGGKYVPRAVLVDLEPGTM 73

HSP 3 Score: 30.4166 bits (67), Expect = 2.123e-23
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERINVYYN +
Sbjct:   38 GDSDLQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB3_MAIZE (Tubulin beta-3 chain OS=Zea mays GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.123e-23
Identity = 33/38 (86.84%), Postives = 34/38 (89.47%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRG 140
            MREILHIQGGQCGNQIG+KFWEVIC EHGVD TG Y G
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICGEHGVDSTGCYSG 38

HSP 2 Score: 44.669 bits (104), Expect = 2.123e-23
Identity = 20/21 (95.24%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA GGRYVPRAVLMDLEPGTM
Sbjct:   53 EAGGGRYVPRAVLMDLEPGTM 73

HSP 3 Score: 28.4906 bits (62), Expect = 2.123e-23
Identity = 12/18 (66.67%), Postives = 14/18 (77.78%), Query Frame = 1

Query:  142 TGVEDLQLERINVYYNRS 195
            +GV   QLERINVYYN +
Sbjct:   37 SGVSPQQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB6_ECTVR (Tubulin beta-6 chain OS=Ectocarpus variabilis GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.753e-23
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+H+Q GQCGNQIGSKFWEVI DEHG+DPTG+Y GD
Sbjct:    1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIDPTGRYHGD 39

HSP 2 Score: 42.3578 bits (98), Expect = 2.753e-23
Identity = 18/21 (85.71%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+ GRYVPRA+LMDLEPGTM
Sbjct:   53 EATAGRYVPRAILMDLEPGTM 73

HSP 3 Score: 26.9498 bits (58), Expect = 2.753e-23
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERIN Y+N +
Sbjct:   38 GDSDLQLERINCYFNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB9_GOSHI (Tubulin beta-9 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.753e-23
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREILHIQGGQCGNQIG+KFWEV+C EHG+D TG+Y GD
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYGGD 39

HSP 2 Score: 41.2022 bits (95), Expect = 2.753e-23
Identity = 19/21 (90.48%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EAS GR+VPRAVLMDLEPGTM
Sbjct:   53 EASCGRFVPRAVLMDLEPGTM 73

HSP 3 Score: 28.8758 bits (63), Expect = 2.753e-23
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  +LQLERINVYYN +
Sbjct:   38 GDSELQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_PIG (Tubulin beta chain OS=Sus scrofa PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.753e-23
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGD 39

HSP 2 Score: 39.6614 bits (91), Expect = 2.753e-23
Identity = 16/21 (76.19%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+G +YVPRA+L+DLEPGTM
Sbjct:   53 EAAGNKYVPRAILVDLEPGTM 73

HSP 3 Score: 31.187 bits (69), Expect = 2.753e-23
Identity = 16/25 (64.00%), Postives = 17/25 (68.00%), Query Frame = 1

Query:  121 PRGSIEVTGVEDLQLERINVYYNRS 195
            P GS    G  DLQLERINVYYN +
Sbjct:   32 PTGSYH--GDSDLQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB2_CHICK (Tubulin beta-2 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.753e-23
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGD 39

HSP 2 Score: 39.6614 bits (91), Expect = 2.753e-23
Identity = 16/21 (76.19%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+G +YVPRA+L+DLEPGTM
Sbjct:   53 EATGNKYVPRAILVDLEPGTM 73

HSP 3 Score: 31.187 bits (69), Expect = 2.753e-23
Identity = 16/25 (64.00%), Postives = 17/25 (68.00%), Query Frame = 1

Query:  121 PRGSIEVTGVEDLQLERINVYYNRS 195
            P GS    G  DLQLERINVYYN +
Sbjct:   32 PTGSYH--GDSDLQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB2B_RAT (Tubulin beta-2B chain OS=Rattus norvegicus GN=Tubb2b PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.753e-23
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGD 39

HSP 2 Score: 39.6614 bits (91), Expect = 2.753e-23
Identity = 16/21 (76.19%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+G +YVPRA+L+DLEPGTM
Sbjct:   53 EATGNKYVPRAILVDLEPGTM 73

HSP 3 Score: 31.187 bits (69), Expect = 2.753e-23
Identity = 16/25 (64.00%), Postives = 17/25 (68.00%), Query Frame = 1

Query:  121 PRGSIEVTGVEDLQLERINVYYNRS 195
            P GS    G  DLQLERINVYYN +
Sbjct:   32 PTGSYH--GDSDLQLERINVYYNEA 54

The following BLAST results are available for this feature:

BLAST of CF504111 vs. ExPASy Swiss-Prot

BLAST of CF504111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219


Match Name	E-value	Identity	Description
TBB2C_BOVIN	1.637e-23	79.49	Tubulin beta-2C chain OS=Bos taurus GN=TUBB2C PE=2...	[more]
TBB1_GADMO	1.637e-23	79.49	Tubulin beta-1 chain OS=Gadus morhua PE=2 SV=1	[more]
TBB_EIMTE	2.122e-23	79.49	Tubulin beta chain OS=Eimeria tenella PE=2 SV=1	[more]
TBB_PARLI	2.123e-23	79.49	Tubulin beta chain OS=Paracentrotus lividus PE=2 S...	[more]
TBB3_MAIZE	2.123e-23	86.84	Tubulin beta-3 chain OS=Zea mays GN=TUBB3 PE=2 SV=...	[more]
TBB6_ECTVR	2.753e-23	82.05	Tubulin beta-6 chain OS=Ectocarpus variabilis GN=T...	[more]
TBB9_GOSHI	2.753e-23	82.05	Tubulin beta-9 chain OS=Gossypium hirsutum PE=2 SV...	[more]
TBB_PIG	2.753e-23	82.05	Tubulin beta chain OS=Sus scrofa PE=1 SV=1	[more]
TBB2_CHICK	2.753e-23	82.05	Tubulin beta-2 chain OS=Gallus gallus PE=2 SV=1	[more]
TBB2B_RAT	2.753e-23	82.05	Tubulin beta-2B chain OS=Rattus norvegicus GN=Tubb...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_119000-599 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_A02 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF504111 ID=CF504111; Name=CF504111; organism=Citrus sinensis; type=EST; length=256bp
CTTCGTTTCCTTTCCGTTTGAGATAAATGAGAGAGATCTTGCACATTCAA
GGAGGCCAATGCGGCAACCAAATCGGATCCAAATTCTGGGAAGTCATTTG
CGACGAGCATGGCGTGGACCCCACGGGGAAGTATAGAGGTGACCGGGGTT
GAGGATCTTCAACTGGAGCGGATCAATGTCTACTACAACCGAAGCTTCCG
GTGGAAGGTACGTGCCTCGGGCTGTTCTCATGGATCTTGAACCCGGTACC
ATGGGA