CF504111
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB2C_BOVIN (Tubulin beta-2C chain OS=Bos taurus GN=TUBB2C PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.637e-23 Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 3 Query: 27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143 MREI+H+Q GQCGNQIG+KFWEVI DEHG+DPTG Y GD Sbjct: 1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGD 39 HSP 2 Score: 42.3578 bits (98), Expect = 1.637e-23 Identity = 18/21 (85.71%), Postives = 21/21 (100.00%), Query Frame = 2 Query: 191 EASGGRYVPRAVLMDLEPGTM 253 EA+GG+YVPRAVL+DLEPGTM Sbjct: 53 EATGGKYVPRAVLVDLEPGTM 73 HSP 3 Score: 30.4166 bits (67), Expect = 1.637e-23 Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1 Query: 145 GVEDLQLERINVYYNRS 195 G DLQLERINVYYN + Sbjct: 38 GDSDLQLERINVYYNEA 54
BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB1_GADMO (Tubulin beta-1 chain OS=Gadus morhua PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.637e-23 Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 3 Query: 27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143 MREI+H+Q GQCGNQIG+KFWEVI DEHG+DPTG Y GD Sbjct: 1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGD 39 HSP 2 Score: 43.5134 bits (101), Expect = 1.637e-23 Identity = 19/21 (90.48%), Postives = 21/21 (100.00%), Query Frame = 2 Query: 191 EASGGRYVPRAVLMDLEPGTM 253 EASGG+YVPRAVL+DLEPGTM Sbjct: 53 EASGGKYVPRAVLVDLEPGTM 73 HSP 3 Score: 29.261 bits (64), Expect = 1.637e-23 Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 1 Query: 145 GVEDLQLERINVYYNRS 195 G DLQL+RINVYYN + Sbjct: 38 GDSDLQLDRINVYYNEA 54
BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_EIMTE (Tubulin beta chain OS=Eimeria tenella PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 2.122e-23 Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 3 Query: 27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143 MREI+H+QGGQCGNQIG+KFWEVI DEHG+ PTG Y+GD Sbjct: 1 MREIVHVQGGQCGNQIGAKFWEVISDEHGIAPTGTYKGD 39 HSP 2 Score: 45.0542 bits (105), Expect = 2.122e-23 Identity = 20/21 (95.24%), Postives = 21/21 (100.00%), Query Frame = 2 Query: 191 EASGGRYVPRAVLMDLEPGTM 253 EA+GGRYVPRAVLMDLEPGTM Sbjct: 53 EATGGRYVPRAVLMDLEPGTM 73 HSP 3 Score: 26.9498 bits (58), Expect = 2.122e-23 Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 1 Query: 145 GVEDLQLERINVYYNRS 195 G DLQLERI+V+YN + Sbjct: 38 GDSDLQLERISVFYNEA 54
BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_PARLI (Tubulin beta chain OS=Paracentrotus lividus PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.123e-23 Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 3 Query: 27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143 MREI+H+Q GQCGNQIG+KFWEVI DEHG+DPTG Y GD Sbjct: 1 MREIVHMQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGD 39 HSP 2 Score: 42.3578 bits (98), Expect = 2.123e-23 Identity = 18/21 (85.71%), Postives = 21/21 (100.00%), Query Frame = 2 Query: 191 EASGGRYVPRAVLMDLEPGTM 253 EA+GG+YVPRAVL+DLEPGTM Sbjct: 53 EATGGKYVPRAVLVDLEPGTM 73 HSP 3 Score: 30.4166 bits (67), Expect = 2.123e-23 Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1 Query: 145 GVEDLQLERINVYYNRS 195 G DLQLERINVYYN + Sbjct: 38 GDSDLQLERINVYYNEA 54
BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB3_MAIZE (Tubulin beta-3 chain OS=Zea mays GN=TUBB3 PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.123e-23 Identity = 33/38 (86.84%), Postives = 34/38 (89.47%), Query Frame = 3 Query: 27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRG 140 MREILHIQGGQCGNQIG+KFWEVIC EHGVD TG Y G Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGVDSTGCYSG 38 HSP 2 Score: 44.669 bits (104), Expect = 2.123e-23 Identity = 20/21 (95.24%), Postives = 20/21 (95.24%), Query Frame = 2 Query: 191 EASGGRYVPRAVLMDLEPGTM 253 EA GGRYVPRAVLMDLEPGTM Sbjct: 53 EAGGGRYVPRAVLMDLEPGTM 73 HSP 3 Score: 28.4906 bits (62), Expect = 2.123e-23 Identity = 12/18 (66.67%), Postives = 14/18 (77.78%), Query Frame = 1 Query: 142 TGVEDLQLERINVYYNRS 195 +GV QLERINVYYN + Sbjct: 37 SGVSPQQLERINVYYNEA 54
BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB6_ECTVR (Tubulin beta-6 chain OS=Ectocarpus variabilis GN=TUBB6 PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.753e-23 Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 3 Query: 27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143 MREI+H+Q GQCGNQIGSKFWEVI DEHG+DPTG+Y GD Sbjct: 1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIDPTGRYHGD 39 HSP 2 Score: 42.3578 bits (98), Expect = 2.753e-23 Identity = 18/21 (85.71%), Postives = 20/21 (95.24%), Query Frame = 2 Query: 191 EASGGRYVPRAVLMDLEPGTM 253 EA+ GRYVPRA+LMDLEPGTM Sbjct: 53 EATAGRYVPRAILMDLEPGTM 73 HSP 3 Score: 26.9498 bits (58), Expect = 2.753e-23 Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 1 Query: 145 GVEDLQLERINVYYNRS 195 G DLQLERIN Y+N + Sbjct: 38 GDSDLQLERINCYFNEA 54
BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB9_GOSHI (Tubulin beta-9 chain OS=Gossypium hirsutum PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 2.753e-23 Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 3 Query: 27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143 MREILHIQGGQCGNQIG+KFWEV+C EHG+D TG+Y GD Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYGGD 39 HSP 2 Score: 41.2022 bits (95), Expect = 2.753e-23 Identity = 19/21 (90.48%), Postives = 20/21 (95.24%), Query Frame = 2 Query: 191 EASGGRYVPRAVLMDLEPGTM 253 EAS GR+VPRAVLMDLEPGTM Sbjct: 53 EASCGRFVPRAVLMDLEPGTM 73 HSP 3 Score: 28.8758 bits (63), Expect = 2.753e-23 Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 1 Query: 145 GVEDLQLERINVYYNRS 195 G +LQLERINVYYN + Sbjct: 38 GDSELQLERINVYYNEA 54
BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_PIG (Tubulin beta chain OS=Sus scrofa PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 2.753e-23 Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 3 Query: 27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143 MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGD 39 HSP 2 Score: 39.6614 bits (91), Expect = 2.753e-23 Identity = 16/21 (76.19%), Postives = 20/21 (95.24%), Query Frame = 2 Query: 191 EASGGRYVPRAVLMDLEPGTM 253 EA+G +YVPRA+L+DLEPGTM Sbjct: 53 EAAGNKYVPRAILVDLEPGTM 73 HSP 3 Score: 31.187 bits (69), Expect = 2.753e-23 Identity = 16/25 (64.00%), Postives = 17/25 (68.00%), Query Frame = 1 Query: 121 PRGSIEVTGVEDLQLERINVYYNRS 195 P GS G DLQLERINVYYN + Sbjct: 32 PTGSYH--GDSDLQLERINVYYNEA 54
BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB2_CHICK (Tubulin beta-2 chain OS=Gallus gallus PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 2.753e-23 Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 3 Query: 27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143 MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGD 39 HSP 2 Score: 39.6614 bits (91), Expect = 2.753e-23 Identity = 16/21 (76.19%), Postives = 20/21 (95.24%), Query Frame = 2 Query: 191 EASGGRYVPRAVLMDLEPGTM 253 EA+G +YVPRA+L+DLEPGTM Sbjct: 53 EATGNKYVPRAILVDLEPGTM 73 HSP 3 Score: 31.187 bits (69), Expect = 2.753e-23 Identity = 16/25 (64.00%), Postives = 17/25 (68.00%), Query Frame = 1 Query: 121 PRGSIEVTGVEDLQLERINVYYNRS 195 P GS G DLQLERINVYYN + Sbjct: 32 PTGSYH--GDSDLQLERINVYYNEA 54
BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB2B_RAT (Tubulin beta-2B chain OS=Rattus norvegicus GN=Tubb2b PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 2.753e-23 Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 3 Query: 27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143 MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGD 39 HSP 2 Score: 39.6614 bits (91), Expect = 2.753e-23 Identity = 16/21 (76.19%), Postives = 20/21 (95.24%), Query Frame = 2 Query: 191 EASGGRYVPRAVLMDLEPGTM 253 EA+G +YVPRA+L+DLEPGTM Sbjct: 53 EATGNKYVPRAILVDLEPGTM 73 HSP 3 Score: 31.187 bits (69), Expect = 2.753e-23 Identity = 16/25 (64.00%), Postives = 17/25 (68.00%), Query Frame = 1 Query: 121 PRGSIEVTGVEDLQLERINVYYNRS 195 P GS G DLQLERINVYYN + Sbjct: 32 PTGSYH--GDSDLQLERINVYYNEA 54 The following BLAST results are available for this feature:
BLAST of CF504111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 219
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504111 ID=CF504111; Name=CF504111; organism=Citrus sinensis; type=EST; length=256bpback to top |