CF504111 | Citrus Genome Database

Overview


Name	CF504111
Unique Name	CF504111
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	256

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig11134	contig	Csv1_Contig11134:898..1151.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB4_HUMAN (Tubulin beta-4 chain OS=Homo sapiens GN=TUBB4 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 2.754e-23
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+H+Q GQCGNQIG+KFWEVI DEHG+DPTG Y GD
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGD 39

HSP 2 Score: 41.5874 bits (96), Expect = 2.754e-23
Identity = 18/21 (85.71%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GG YVPRAVL+DLEPGTM
Sbjct:   53 EATGGNYVPRAVLVDLEPGTM 73

HSP 3 Score: 30.4166 bits (67), Expect = 2.754e-23
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERINVYYN +
Sbjct:   38 GDSDLQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB4_BOVIN (Tubulin beta-4 chain OS=Bos taurus GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.754e-23
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+H+Q GQCGNQIG+KFWEVI DEHG+DPTG Y GD
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGD 39

HSP 2 Score: 41.5874 bits (96), Expect = 2.754e-23
Identity = 18/21 (85.71%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GG YVPRAVL+DLEPGTM
Sbjct:   53 EATGGNYVPRAVLVDLEPGTM 73

HSP 3 Score: 30.4166 bits (67), Expect = 2.754e-23
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERINVYYN +
Sbjct:   38 GDSDLQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB9_ARATH (Tubulin beta-9 chain OS=Arabidopsis thaliana GN=TUBB9 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.754e-23
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREILHIQGGQCGNQIG+KFWEVIC EHG+D TG+  GD
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGD 39

HSP 2 Score: 45.0542 bits (105), Expect = 2.754e-23
Identity = 20/21 (95.24%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EASGG+YVPRAVLMDLEPGTM
Sbjct:   53 EASGGKYVPRAVLMDLEPGTM 73

HSP 3 Score: 28.4906 bits (62), Expect = 2.754e-23
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERINVY+N +
Sbjct:   38 GDTDLQLERINVYFNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB1_LUPAL (Tubulin beta-1 chain OS=Lupinus albus GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.571e-23
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREILHIQGGQCGNQIG+KFWEV+C EHG+D TG+Y GD
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYGGD 39

HSP 2 Score: 41.2022 bits (95), Expect = 3.571e-23
Identity = 19/21 (90.48%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EAS GR+VPRAVLMDLEPGTM
Sbjct:   53 EASCGRFVPRAVLMDLEPGTM 73

HSP 3 Score: 28.4906 bits (62), Expect = 3.571e-23
Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  +LQLER+NVYYN +
Sbjct:   38 GDNELQLERVNVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_LEIME (Tubulin beta chain OS=Leishmania mexicana PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.571e-23
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+  Q GQCGNQIGSKFWEVI DEHGVDPTG Y+GD
Sbjct:    1 MREIVSCQAGQCGNQIGSKFWEVIADEHGVDPTGSYQGD 39

HSP 2 Score: 43.8986 bits (102), Expect = 3.571e-23
Identity = 19/21 (90.48%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            E++GGRYVPRAVLMDLEPGTM
Sbjct:   53 ESAGGRYVPRAVLMDLEPGTM 73

HSP 3 Score: 29.6462 bits (65), Expect = 3.571e-23
Identity = 15/25 (60.00%), Postives = 18/25 (72.00%), Query Frame = 1

Query:  121 PRGSIEVTGVEDLQLERINVYYNRS 195
            P GS +  G  DLQLERINVY++ S
Sbjct:   32 PTGSYQ--GDSDLQLERINVYFDES 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB1_GLOMM (Tubulin beta-1 chain OS=Glossina morsitans morsitans PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.632e-23
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQ GQCGNQIG+KFWE+I DEHG+D TG Y GD
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDATGAYHGD 39

HSP 2 Score: 43.5134 bits (101), Expect = 4.632e-23
Identity = 19/21 (90.48%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EASGG+YVPRAVL+DLEPGTM
Sbjct:   53 EASGGKYVPRAVLVDLEPGTM 73

HSP 3 Score: 30.4166 bits (67), Expect = 4.632e-23
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERINVYYN +
Sbjct:   38 GDSDLQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB1_DROME (Tubulin beta-1 chain OS=Drosophila melanogaster GN=betaTub56D PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 4.632e-23
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQ GQCGNQIG+KFWE+I DEHG+D TG Y GD
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDATGAYHGD 39

HSP 2 Score: 43.5134 bits (101), Expect = 4.632e-23
Identity = 19/21 (90.48%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EASGG+YVPRAVL+DLEPGTM
Sbjct:   53 EASGGKYVPRAVLVDLEPGTM 73

HSP 3 Score: 30.4166 bits (67), Expect = 4.632e-23
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERINVYYN +
Sbjct:   38 GDSDLQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_PSEAM (Tubulin beta chain OS=Pseudopleuronectes americanus PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.007e-23
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREILH+Q GQCGNQIG+KFWEVI DEHG+DP+G Y GD
Sbjct:    1 MREILHLQAGQCGNQIGAKFWEVISDEHGIDPSGTYHGD 39

HSP 2 Score: 42.3578 bits (98), Expect = 6.007e-23
Identity = 18/21 (85.71%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GG+YVPRAVL+DLEPGTM
Sbjct:   53 EATGGKYVPRAVLVDLEPGTM 73

HSP 3 Score: 28.8758 bits (63), Expect = 6.007e-23
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  +LQLERINVYYN +
Sbjct:   38 GDNELQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB1_SOYBN (Tubulin beta-1 chain OS=Glycine max GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.007e-23
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREILH+Q GQCGNQIG KFWEV+CDEHG+D TG Y G+
Sbjct:    1 MREILHVQAGQCGNQIGGKFWEVMCDEHGIDATGNYVGN 39

HSP 2 Score: 46.2098 bits (108), Expect = 6.007e-23
Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EASGGRYVPRAVLMDLEPGTM
Sbjct:   53 EASGGRYVPRAVLMDLEPGTM 73

HSP 3 Score: 26.5646 bits (57), Expect = 6.007e-23
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 1

Query:  157 LQLERINVYYNRS 195
            LQLER+NVYYN +
Sbjct:   42 LQLERVNVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB2_LUPAL (Tubulin beta-2 chain OS=Lupinus albus GN=TUBB2 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 7.788e-23
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREILHIQGGQCGNQIG+KFWEV+C EHG+D TG+Y GD
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYEGD 39

HSP 2 Score: 41.2022 bits (95), Expect = 7.788e-23
Identity = 19/21 (90.48%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EAS GR+VPRAVLMDLEPGTM
Sbjct:   53 EASCGRFVPRAVLMDLEPGTM 73

HSP 3 Score: 26.5646 bits (57), Expect = 7.788e-23
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 1

Query:  157 LQLERINVYYNRS 195
            LQLER+NVYYN +
Sbjct:   42 LQLERVNVYYNEA 54

The following BLAST results are available for this feature:

BLAST of CF504111 vs. ExPASy Swiss-Prot

BLAST of CF504111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219


Match Name	E-value	Identity	Description
TBB4_HUMAN	2.754e-23	79.49	Tubulin beta-4 chain OS=Homo sapiens GN=TUBB4 PE=1...	[more]
TBB4_BOVIN	2.754e-23	79.49	Tubulin beta-4 chain OS=Bos taurus GN=TUBB4 PE=2 S...	[more]
TBB9_ARATH	2.754e-23	82.05	Tubulin beta-9 chain OS=Arabidopsis thaliana GN=TU...	[more]
TBB1_LUPAL	3.571e-23	82.05	Tubulin beta-1 chain OS=Lupinus albus GN=TUBB1 PE=...	[more]
TBB_LEIME	3.571e-23	82.05	Tubulin beta chain OS=Leishmania mexicana PE=3 SV=...	[more]
TBB1_GLOMM	4.632e-23	76.92	Tubulin beta-1 chain OS=Glossina morsitans morsita...	[more]
TBB1_DROME	4.632e-23	76.92	Tubulin beta-1 chain OS=Drosophila melanogaster GN...	[more]
TBB_PSEAM	6.007e-23	79.49	Tubulin beta chain OS=Pseudopleuronectes americanu...	[more]
TBB1_SOYBN	6.007e-23	76.92	Tubulin beta-1 chain OS=Glycine max GN=TUBB1 PE=3 ...	[more]
TBB2_LUPAL	7.788e-23	82.05	Tubulin beta-2 chain OS=Lupinus albus GN=TUBB2 PE=...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_119000-599 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_A02 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF504111 ID=CF504111; Name=CF504111; organism=Citrus sinensis; type=EST; length=256bp
CTTCGTTTCCTTTCCGTTTGAGATAAATGAGAGAGATCTTGCACATTCAA
GGAGGCCAATGCGGCAACCAAATCGGATCCAAATTCTGGGAAGTCATTTG
CGACGAGCATGGCGTGGACCCCACGGGGAAGTATAGAGGTGACCGGGGTT
GAGGATCTTCAACTGGAGCGGATCAATGTCTACTACAACCGAAGCTTCCG
GTGGAAGGTACGTGCCTCGGGCTGTTCTCATGGATCTTGAACCCGGTACC
ATGGGA