CF504111
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB4_HUMAN (Tubulin beta-4 chain OS=Homo sapiens GN=TUBB4 PE=1 SV=2) HSP 1 Score: 76.6406 bits (187), Expect = 2.754e-23 Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 3 Query: 27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143 MREI+H+Q GQCGNQIG+KFWEVI DEHG+DPTG Y GD Sbjct: 1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGD 39 HSP 2 Score: 41.5874 bits (96), Expect = 2.754e-23 Identity = 18/21 (85.71%), Postives = 20/21 (95.24%), Query Frame = 2 Query: 191 EASGGRYVPRAVLMDLEPGTM 253 EA+GG YVPRAVL+DLEPGTM Sbjct: 53 EATGGNYVPRAVLVDLEPGTM 73 HSP 3 Score: 30.4166 bits (67), Expect = 2.754e-23 Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1 Query: 145 GVEDLQLERINVYYNRS 195 G DLQLERINVYYN + Sbjct: 38 GDSDLQLERINVYYNEA 54
BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB4_BOVIN (Tubulin beta-4 chain OS=Bos taurus GN=TUBB4 PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 2.754e-23 Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 3 Query: 27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143 MREI+H+Q GQCGNQIG+KFWEVI DEHG+DPTG Y GD Sbjct: 1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGD 39 HSP 2 Score: 41.5874 bits (96), Expect = 2.754e-23 Identity = 18/21 (85.71%), Postives = 20/21 (95.24%), Query Frame = 2 Query: 191 EASGGRYVPRAVLMDLEPGTM 253 EA+GG YVPRAVL+DLEPGTM Sbjct: 53 EATGGNYVPRAVLVDLEPGTM 73 HSP 3 Score: 30.4166 bits (67), Expect = 2.754e-23 Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1 Query: 145 GVEDLQLERINVYYNRS 195 G DLQLERINVYYN + Sbjct: 38 GDSDLQLERINVYYNEA 54
BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB9_ARATH (Tubulin beta-9 chain OS=Arabidopsis thaliana GN=TUBB9 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 2.754e-23 Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 3 Query: 27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143 MREILHIQGGQCGNQIG+KFWEVIC EHG+D TG+ GD Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGD 39 HSP 2 Score: 45.0542 bits (105), Expect = 2.754e-23 Identity = 20/21 (95.24%), Postives = 21/21 (100.00%), Query Frame = 2 Query: 191 EASGGRYVPRAVLMDLEPGTM 253 EASGG+YVPRAVLMDLEPGTM Sbjct: 53 EASGGKYVPRAVLMDLEPGTM 73 HSP 3 Score: 28.4906 bits (62), Expect = 2.754e-23 Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 1 Query: 145 GVEDLQLERINVYYNRS 195 G DLQLERINVY+N + Sbjct: 38 GDTDLQLERINVYFNEA 54
BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB1_LUPAL (Tubulin beta-1 chain OS=Lupinus albus GN=TUBB1 PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.571e-23 Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 3 Query: 27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143 MREILHIQGGQCGNQIG+KFWEV+C EHG+D TG+Y GD Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYGGD 39 HSP 2 Score: 41.2022 bits (95), Expect = 3.571e-23 Identity = 19/21 (90.48%), Postives = 20/21 (95.24%), Query Frame = 2 Query: 191 EASGGRYVPRAVLMDLEPGTM 253 EAS GR+VPRAVLMDLEPGTM Sbjct: 53 EASCGRFVPRAVLMDLEPGTM 73 HSP 3 Score: 28.4906 bits (62), Expect = 3.571e-23 Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 1 Query: 145 GVEDLQLERINVYYNRS 195 G +LQLER+NVYYN + Sbjct: 38 GDNELQLERVNVYYNEA 54
BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_LEIME (Tubulin beta chain OS=Leishmania mexicana PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 3.571e-23 Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 3 Query: 27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143 MREI+ Q GQCGNQIGSKFWEVI DEHGVDPTG Y+GD Sbjct: 1 MREIVSCQAGQCGNQIGSKFWEVIADEHGVDPTGSYQGD 39 HSP 2 Score: 43.8986 bits (102), Expect = 3.571e-23 Identity = 19/21 (90.48%), Postives = 21/21 (100.00%), Query Frame = 2 Query: 191 EASGGRYVPRAVLMDLEPGTM 253 E++GGRYVPRAVLMDLEPGTM Sbjct: 53 ESAGGRYVPRAVLMDLEPGTM 73 HSP 3 Score: 29.6462 bits (65), Expect = 3.571e-23 Identity = 15/25 (60.00%), Postives = 18/25 (72.00%), Query Frame = 1 Query: 121 PRGSIEVTGVEDLQLERINVYYNRS 195 P GS + G DLQLERINVY++ S Sbjct: 32 PTGSYQ--GDSDLQLERINVYFDES 54
BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB1_GLOMM (Tubulin beta-1 chain OS=Glossina morsitans morsitans PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 4.632e-23 Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 3 Query: 27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143 MREI+HIQ GQCGNQIG+KFWE+I DEHG+D TG Y GD Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDATGAYHGD 39 HSP 2 Score: 43.5134 bits (101), Expect = 4.632e-23 Identity = 19/21 (90.48%), Postives = 21/21 (100.00%), Query Frame = 2 Query: 191 EASGGRYVPRAVLMDLEPGTM 253 EASGG+YVPRAVL+DLEPGTM Sbjct: 53 EASGGKYVPRAVLVDLEPGTM 73 HSP 3 Score: 30.4166 bits (67), Expect = 4.632e-23 Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1 Query: 145 GVEDLQLERINVYYNRS 195 G DLQLERINVYYN + Sbjct: 38 GDSDLQLERINVYYNEA 54
BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB1_DROME (Tubulin beta-1 chain OS=Drosophila melanogaster GN=betaTub56D PE=1 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 4.632e-23 Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 3 Query: 27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143 MREI+HIQ GQCGNQIG+KFWE+I DEHG+D TG Y GD Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDATGAYHGD 39 HSP 2 Score: 43.5134 bits (101), Expect = 4.632e-23 Identity = 19/21 (90.48%), Postives = 21/21 (100.00%), Query Frame = 2 Query: 191 EASGGRYVPRAVLMDLEPGTM 253 EASGG+YVPRAVL+DLEPGTM Sbjct: 53 EASGGKYVPRAVLVDLEPGTM 73 HSP 3 Score: 30.4166 bits (67), Expect = 4.632e-23 Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1 Query: 145 GVEDLQLERINVYYNRS 195 G DLQLERINVYYN + Sbjct: 38 GDSDLQLERINVYYNEA 54
BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_PSEAM (Tubulin beta chain OS=Pseudopleuronectes americanus PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 6.007e-23 Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 3 Query: 27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143 MREILH+Q GQCGNQIG+KFWEVI DEHG+DP+G Y GD Sbjct: 1 MREILHLQAGQCGNQIGAKFWEVISDEHGIDPSGTYHGD 39 HSP 2 Score: 42.3578 bits (98), Expect = 6.007e-23 Identity = 18/21 (85.71%), Postives = 21/21 (100.00%), Query Frame = 2 Query: 191 EASGGRYVPRAVLMDLEPGTM 253 EA+GG+YVPRAVL+DLEPGTM Sbjct: 53 EATGGKYVPRAVLVDLEPGTM 73 HSP 3 Score: 28.8758 bits (63), Expect = 6.007e-23 Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 1 Query: 145 GVEDLQLERINVYYNRS 195 G +LQLERINVYYN + Sbjct: 38 GDNELQLERINVYYNEA 54
BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB1_SOYBN (Tubulin beta-1 chain OS=Glycine max GN=TUBB1 PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 6.007e-23 Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 3 Query: 27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143 MREILH+Q GQCGNQIG KFWEV+CDEHG+D TG Y G+ Sbjct: 1 MREILHVQAGQCGNQIGGKFWEVMCDEHGIDATGNYVGN 39 HSP 2 Score: 46.2098 bits (108), Expect = 6.007e-23 Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = 2 Query: 191 EASGGRYVPRAVLMDLEPGTM 253 EASGGRYVPRAVLMDLEPGTM Sbjct: 53 EASGGRYVPRAVLMDLEPGTM 73 HSP 3 Score: 26.5646 bits (57), Expect = 6.007e-23 Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 1 Query: 157 LQLERINVYYNRS 195 LQLER+NVYYN + Sbjct: 42 LQLERVNVYYNEA 54
BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB2_LUPAL (Tubulin beta-2 chain OS=Lupinus albus GN=TUBB2 PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 7.788e-23 Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 3 Query: 27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143 MREILHIQGGQCGNQIG+KFWEV+C EHG+D TG+Y GD Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYEGD 39 HSP 2 Score: 41.2022 bits (95), Expect = 7.788e-23 Identity = 19/21 (90.48%), Postives = 20/21 (95.24%), Query Frame = 2 Query: 191 EASGGRYVPRAVLMDLEPGTM 253 EAS GR+VPRAVLMDLEPGTM Sbjct: 53 EASCGRFVPRAVLMDLEPGTM 73 HSP 3 Score: 26.5646 bits (57), Expect = 7.788e-23 Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 1 Query: 157 LQLERINVYYNRS 195 LQLER+NVYYN + Sbjct: 42 LQLERVNVYYNEA 54 The following BLAST results are available for this feature:
BLAST of CF504111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 219
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504111 ID=CF504111; Name=CF504111; organism=Citrus sinensis; type=EST; length=256bpback to top |