CF504112

Overview
NameCF504112
Unique NameCF504112
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length314
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504112 vs. ExPASy Swiss-Prot
Match: CDC54_YEAST (Cell division control protein 54 OS=Saccharomyces cerevisiae GN=CDC54 PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 5.287e-25
Identity = 54/104 (51.92%), Postives = 75/104 (72.12%), Query Frame = 1
Query:    1 SLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGI 312
            S+AP IY  ED+KK +LL L G  ++    G + RGD++I L GDP  +KSQ+L+++  + PRGVYT+G+GSS VGLTA + RD  T ++VLE GALVL+D G+
Sbjct:  525 SIAPSIYELEDVKKGILLQLFGGTNKTFTKGGRYRGDINILLCGDPSTSKSQILQYVHKITPRGVYTSGKGSSAVGLTAYITRDVDTKQLVLESGALVLSDGGV 628          
BLAST of CF504112 vs. ExPASy Swiss-Prot
Match: MCM6_DICDI (DNA replication licensing factor mcm6 OS=Dictyostelium discoideum GN=mcm6 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.905e-25
Identity = 48/104 (46.15%), Postives = 76/104 (73.08%), Query Frame = 1
Query:    1 SLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGI 312
            S+ P I+GHE+IK+ +LL+L G  H+K  + +++RGD+++C++GDP  +KS  LK++++  PR VYT+G+ SS  GLTA V +D  + +  +E GAL+LAD GI
Sbjct:  427 SICPSIFGHEEIKRGVLLMLFGGVHKKTPEKIRLRGDINVCIVGDPSTSKSTFLKYLVSFLPRTVYTSGKASSAAGLTATVVKDQESGDFNIEAGALMLADNGI 530          
BLAST of CF504112 vs. ExPASy Swiss-Prot
Match: MCM6M_XENTR (Maternal DNA replication licensing factor mcm6 OS=Xenopus tropicalis GN=mmcm6 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.905e-25
Identity = 50/104 (48.08%), Postives = 76/104 (73.08%), Query Frame = 1
Query:    1 SLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGI 312
            SL P I+G+++IK+ +LL+L G   +   +G  +RGD+++C++GDP  +KSQ LKH+   +PR VYT+G+ SS  GLTAAV +D  ++E V+E GAL+LAD G+
Sbjct:  354 SLFPTIHGNDEIKRGVLLMLFGGVPKTTMEGTSLRGDINVCIVGDPSTSKSQFLKHVEEFSPRAVYTSGKASSAAGLTAAVVKDEESHEFVIEAGALMLADNGV 457          
BLAST of CF504112 vs. ExPASy Swiss-Prot
Match: MCM6M_XENLA (Maternal DNA replication licensing factor mcm6 OS=Xenopus laevis GN=mmcm6 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.905e-25
Identity = 50/104 (48.08%), Postives = 76/104 (73.08%), Query Frame = 1
Query:    1 SLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGI 312
            SL P I+G+++IK+ +LL+L G   +   +G  +RGD+++C++GDP  +KSQ LKH+   +PR VYT+G+ SS  GLTAAV +D  ++E V+E GAL+LAD G+
Sbjct:  355 SLFPTIHGNDEIKRGVLLMLFGGVPKTTMEGTSLRGDINVCIVGDPSTSKSQFLKHVEEFSPRAVYTSGKASSAAGLTAAVVKDEESHEFVIEAGALMLADNGV 458          
BLAST of CF504112 vs. ExPASy Swiss-Prot
Match: MC6ZA_XENLA (Zygotic DNA replication licensing factor mcm6-A OS=Xenopus laevis GN=zmcm6-A PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.018e-25
Identity = 48/104 (46.15%), Postives = 76/104 (73.08%), Query Frame = 1
Query:    1 SLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGI 312
            SL P ++G++++K+ +LL+L G   +   +G  +RGD+++C++GDP  AKSQ LKH+   +PR VYT+G+ S+  GLTAAV +D  ++E V+E GAL+LAD G+
Sbjct:  354 SLFPTVHGNDEVKRGILLMLFGGVPKSTMEGTSLRGDINVCVVGDPSTAKSQFLKHVEEFSPRAVYTSGKASTAAGLTAAVVKDEESHEFVIEAGALMLADNGV 457          
BLAST of CF504112 vs. ExPASy Swiss-Prot
Match: MCM6_BOVIN (DNA replication licensing factor MCM6 OS=Bos taurus GN=MCM6 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.178e-24
Identity = 50/104 (48.08%), Postives = 75/104 (72.12%), Query Frame = 1
Query:    1 SLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGI 312
            SL P I+G++++K+ +LL+L G   +   +G  +RGD+++C++GDP  AKSQ LKH+   +PR VYT+G+ S   GLTAAV RD  ++E V+E GAL+LAD G+
Sbjct:  353 SLFPTIHGNDEVKRGVLLMLFGGVPKTTGEGTSLRGDINVCIVGDPSTAKSQFLKHVEEFSPRAVYTSGKASIAAGLTAAVVRDEESHEFVIEAGALMLADNGV 456          
BLAST of CF504112 vs. ExPASy Swiss-Prot
Match: MCM6_CAEBR (DNA replication licensing factor mcm-6 OS=Caenorhabditis briggsae GN=mcm-6 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.624e-24
Identity = 53/105 (50.48%), Postives = 76/105 (72.38%), Query Frame = 1
Query:    1 SLAPEIYGHEDIKKALLLLLVGAPHRKLKD-GMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGI 312
            SL P IYG+ ++K  +LL+L+G   +K KD G  +RGD+++CL+GDP  AKSQ+LK +   +PR +YT+G+ SS  GLTAAV +D  + E V+E GAL+LAD G+
Sbjct:  353 SLFPNIYGNHEVKLGVLLMLLGGVAKKSKDEGTSLRGDINVCLVGDPSTAKSQVLKAVEEFSPRAIYTSGKASSAAGLTAAVVKDEESFEFVIEAGALMLADNGV 457          
BLAST of CF504112 vs. ExPASy Swiss-Prot
Match: MCM6_ANOGA (DNA replication licensing factor Mcm6 OS=Anopheles gambiae GN=Mcm6 PE=3 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 4.476e-24
Identity = 50/104 (48.08%), Postives = 75/104 (72.12%), Query Frame = 1
Query:    1 SLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGI 312
            SL P IYG++++K+ +LL+L G   +  ++   +RGD+++C++GDP  AKSQ LK + + +PR VYT+G+ SS  GLTAAV RD  + + V+E GAL+LAD GI
Sbjct:  346 SLFPSIYGNDEVKRGILLMLFGGVAKTTQEKTTLRGDINVCIVGDPSTAKSQFLKQVSDFSPRAVYTSGKASSAAGLTAAVVRDEESFDFVIEAGALMLADNGI 449          
BLAST of CF504112 vs. ExPASy Swiss-Prot
Match: MCM6_CAEEL (DNA replication licensing factor mcm-6 OS=Caenorhabditis elegans GN=mcm-6 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.845e-24
Identity = 52/105 (49.52%), Postives = 76/105 (72.38%), Query Frame = 1
Query:    1 SLAPEIYGHEDIKKALLLLLVGAPHRKLKD-GMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGI 312
            SL P IYG+ ++K  +LL+L+G   +K +D G  +RGD+++CL+GDP  AKSQ+LK +   +PR +YT+G+ SS  GLTAAV +D  + E V+E GAL+LAD G+
Sbjct:  353 SLFPNIYGNHEVKLGVLLMLLGGVAKKSRDEGTSLRGDINVCLVGDPSTAKSQVLKAVEEFSPRAIYTSGKASSAAGLTAAVVKDEESFEFVIEAGALMLADNGV 457          
BLAST of CF504112 vs. ExPASy Swiss-Prot
Match: MCM4_MOUSE (DNA replication licensing factor MCM4 OS=Mus musculus GN=Mcm4 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.634e-24
Identity = 56/106 (52.83%), Postives = 74/106 (69.81%), Query Frame = 1
Query:    1 SLAPEIYGHEDIKKALLLLLVGAPHRKLKDGM--KIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGI 312
            +LAP IY HEDIKK +LL L G   +        K R +++I L GDPG +KSQLL+++ N+ PRG YT+G+GSS VGLTA V +D  T ++VL+ GALVL+D GI
Sbjct:  464 ALAPSIYEHEDIKKGILLQLFGGTRKDFSHTGRGKFRAEINILLCGDPGTSKSQLLQYVYNLVPRGQYTSGKGSSAVGLTAYVMKDPETRQLVLQTGALVLSDNGI 569          
The following BLAST results are available for this feature:
BLAST of CF504112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CDC54_YEAST5.287e-2551.92Cell division control protein 54 OS=Saccharomyces ... [more]
MCM6_DICDI6.905e-2546.15DNA replication licensing factor mcm6 OS=Dictyoste... [more]
MCM6M_XENTR6.905e-2548.08Maternal DNA replication licensing factor mcm6 OS=... [more]
MCM6M_XENLA6.905e-2548.08Maternal DNA replication licensing factor mcm6 OS=... [more]
MC6ZA_XENLA9.018e-2546.15Zygotic DNA replication licensing factor mcm6-A OS... [more]
MCM6_BOVIN1.178e-2448.08DNA replication licensing factor MCM6 OS=Bos tauru... [more]
MCM6_CAEBR2.624e-2450.48DNA replication licensing factor mcm-6 OS=Caenorha... [more]
MCM6_ANOGA4.476e-2448.08DNA replication licensing factor Mcm6 OS=Anopheles... [more]
MCM6_CAEEL5.845e-2449.52DNA replication licensing factor mcm-6 OS=Caenorha... [more]
MCM4_MOUSE7.634e-2452.83DNA replication licensing factor MCM4 OS=Mus muscu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-600 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504112 ID=CF504112; Name=CF504112; organism=Citrus sinensis; type=EST; length=314bp
TCACTGGCCCCTGAAATTTATGGACATGAAGATATTAAAAAAGCTCTGCT
TCTTCTCCTTGTGGGTGCTCCTCACCGCAAATTAAAGGATGGGATGAAGA
TTAGAGGAGACTTACATATATGTCTGATGGGTGATCCTGGGGTTGCCAAA
AGTCAGCTTCTCAAGCACATTATCAATGTAGCGCCCAGGGGGGTGTATAC
CACTGGAAGAGGTAGCAGTGGAGTTGGTCTAACTGCTGCTGTTCAGAGAG
ATAATGTGACAAATGAGATGGTTCTGGAAGGAGGAGCATTGGTGCTAGCA
GATATGGGTATTTG
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