CF504112

Overview
NameCF504112
Unique NameCF504112
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length314
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504112 vs. ExPASy Swiss-Prot
Match: MCM9_MOUSE (DNA replication licensing factor MCM9 OS=Mus musculus GN=Mcm9 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 4.793e-18
Identity = 46/104 (44.23%), Postives = 64/104 (61.54%), Query Frame = 1
Query:    1 SLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGI 312
            SL P+++G   +K A+ ++L G   R    G ++RG+ H+ L+GDPG  KSQ LK+   + PR V TTG GS+  GLT    +D  + E  LE GALVLAD G+
Sbjct:  309 SLCPQVFGMYLVKLAVAMVLAGGIQRTDAAGTRVRGESHLLLVGDPGTGKSQFLKYAAKITPRSVLTTGIGSTSAGLTVTAVKD--SGEWNLEAGALVLADAGL 410          
BLAST of CF504112 vs. ExPASy Swiss-Prot
Match: MCM9_XENLA (DNA replication licensing factor MCM9 OS=Xenopus laevis GN=mcm9 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.107e-17
Identity = 45/104 (43.27%), Postives = 63/104 (60.58%), Query Frame = 1
Query:    1 SLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGI 312
            SL P+++G   +K A+ ++L G   R    G ++RG+ H+ L+GDPG  KSQ LK+   + PR V T G GS+  GLT    +D  + E  LE GALVLAD G+
Sbjct:  310 SLCPQVFGMFVVKLAVAMVLAGGVQRIDSAGTRVRGESHLLLVGDPGTGKSQFLKYAAKITPRSVLTAGIGSTSAGLTVTAVKD--SGEWNLEAGALVLADGGL 411          
BLAST of CF504112 vs. ExPASy Swiss-Prot
Match: Y961_METJA (Uncharacterized MCM-type protein MJ0961 OS=Methanocaldococcus jannaschii GN=MJ0961 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.680e-11
Identity = 37/104 (35.58%), Postives = 59/104 (56.73%), Query Frame = 1
Query:    4 LAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRD--NVTNEMVLEGGALVLADMG 309
            L  +I G+E +KKA+ L  +    + L DG  +R D HI L+ DPG+ KS +L+ I  + P+  Y +   ++G GLTA V R+   + +  V++ G  V A+ G
Sbjct:  342 LISQIKGYELVKKAIFLQQIKGAFKFLPDGTPLRRDSHILLITDPGIGKSTMLRRIARLFPQNAYASVTTATGGGLTAIVTREATEIGDGWVVKPGVFVRANEG 445          
The following BLAST results are available for this feature:
BLAST of CF504112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
MCM9_MOUSE4.793e-1844.23DNA replication licensing factor MCM9 OS=Mus muscu... [more]
MCM9_XENLA3.107e-1743.27DNA replication licensing factor MCM9 OS=Xenopus l... [more]
Y961_METJA9.680e-1135.58Uncharacterized MCM-type protein MJ0961 OS=Methano... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-600 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504112 ID=CF504112; Name=CF504112; organism=Citrus sinensis; type=EST; length=314bp
TCACTGGCCCCTGAAATTTATGGACATGAAGATATTAAAAAAGCTCTGCT
TCTTCTCCTTGTGGGTGCTCCTCACCGCAAATTAAAGGATGGGATGAAGA
TTAGAGGAGACTTACATATATGTCTGATGGGTGATCCTGGGGTTGCCAAA
AGTCAGCTTCTCAAGCACATTATCAATGTAGCGCCCAGGGGGGTGTATAC
CACTGGAAGAGGTAGCAGTGGAGTTGGTCTAACTGCTGCTGTTCAGAGAG
ATAATGTGACAAATGAGATGGTTCTGGAAGGAGGAGCATTGGTGCTAGCA
GATATGGGTATTTG
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