CF504120

Overview
NameCF504120
Unique NameCF504120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length226
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1217 contig Csv1_Contig1217:250..476. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504120 vs. ExPASy Swiss-Prot
Match: APX5_ARATH (L-ascorbate peroxidase 5, peroxisomal OS=Arabidopsis thaliana GN=APX5 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.622e-11
Identity = 33/49 (67.35%), Postives = 36/49 (73.47%), Query Frame = 3 
Query:   27 GLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDD 173
            GL+ AV   E  K + P +SYADLYQLAGVV VEVTGGP IPF PGR D
Sbjct:   70 GLEKAVAFCEEVKAKHPRVSYADLYQLAGVVAVEVTGGPAIPFTPGRKD 118
The following BLAST results are available for this feature:
BLAST of CF504120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
APX5_ARATH2.622e-1167.35L-ascorbate peroxidase 5, peroxisomal OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-608 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504120 ID=CF504120; Name=CF504120; organism=Citrus sinensis; type=EST; length=226bp
CTCGTGCCGAATCGGCACGAGGCAACGGCCTCGATATTGCCGTTAGGCTT
TTGGAGCCGTTCAAGGAGCAGTTCCCTACCATCTCCTACGCTGACCTTTA
TCAGCTTGCTGGTGTTGTTGGCGTTGAGGTTACCGGTGGGCCCGATATCC
CCTTCCACCCTGGAAGAGATGACAAGGCTGAGCCACCTCAAGAAGCCGGC
TTCCTGATGCTAAACAGGGTAATGAT
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