CF504130
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF504130 vs. ExPASy Swiss-Prot
Match: DDX27_HUMAN (Probable ATP-dependent RNA helicase DDX27 OS=Homo sapiens GN=DDX27 PE=1 SV=2) HSP 1 Score: 88.9669 bits (219), Expect = 1.135e-17 Identity = 46/114 (40.35%), Postives = 74/114 (64.91%), Query Frame = 3 Query: 9 YVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAH-KEEIFARPKRTWFVTEKEKK 347 YVHRVGRTARAGR G +V+ V +++R +LK I K A + +K+RI+ + I K+ IE+ME V A+LQ ++++E + A+ ++ KE + P+R+WF T++E+K Sbjct: 547 YVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAVVQEPERSWFQTKEERK 660
BLAST of CF504130 vs. ExPASy Swiss-Prot
Match: DDX27_BOVIN (Probable ATP-dependent RNA helicase DDX27 OS=Bos taurus GN=DDX27 PE=2 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 3.302e-17 Identity = 47/114 (41.23%), Postives = 72/114 (63.16%), Query Frame = 3 Query: 9 YVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAH-KEEIFARPKRTWFVTEKEKK 347 YVHRVGRTARAGR G +V+ V + +R +LK I K A + +K+RI+ + I K+ IE+ME V A+LQ ++K+E + A+ ++ KE P+R+WF T++E+K Sbjct: 516 YVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQKSEAQINTAQRLLEKGKEAPNPEPERSWFQTKEERK 629
BLAST of CF504130 vs. ExPASy Swiss-Prot
Match: DDX27_MOUSE (Probable ATP-dependent RNA helicase DDX27 OS=Mus musculus GN=Ddx27 PE=1 SV=2) HSP 1 Score: 87.0409 bits (214), Expect = 4.312e-17 Identity = 46/114 (40.35%), Postives = 73/114 (64.04%), Query Frame = 3 Query: 9 YVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAH-KEEIFARPKRTWFVTEKEKK 347 YVHRVGRTARAGR G +V+ V + +R +LK I K A + +K+RI+ + I K+ IE++E V A+LQ ++++E + A+ ++A KE P+R+WF T++E+K Sbjct: 513 YVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKLEKDVYAVLQLEAEEKEMQQSEAQIDTAQRLLAKGKETADQEPERSWFQTKEERK 626
BLAST of CF504130 vs. ExPASy Swiss-Prot
Match: DRS1_YARLI (ATP-dependent RNA helicase DRS1 OS=Yarrowia lipolytica GN=DRS1 PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 3.650e-16 Identity = 49/129 (37.98%), Postives = 75/129 (58.14%), Query Frame = 3 Query: 9 YVHRVGRTARAGREGYAVTFVTDN--DRSL----LKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASI 377 Y+HRVGRTARAGREG ++T V + DR++ +K++++ K R V + K IE+ D V IL + +AEME K EN++ +++EI +RP+RTWF +EKK +DK ++ Sbjct: 582 YLHRVGRTARAGREGRSITLVGEAAADRAIVREAIKSVSESKQGKAVGRNVDWPEVEKLYSKIEEKGDIVNEILAEEKEEKAMLQAEMEVRKGENLLKYEKEIASRPRRTWFQNAQEKKADETSDKRNL 710
BLAST of CF504130 vs. ExPASy Swiss-Prot
Match: DRS1_LODEL (ATP-dependent RNA helicase DRS1 OS=Lodderomyces elongisporus GN=DRS1 PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 8.991e-15 Identity = 45/131 (34.35%), Postives = 78/131 (59.54%), Query Frame = 3 Query: 9 YVHRVGRTARAGREGYAVTFVTDN--DRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGS 395 Y HRVGRTARAGR+G +++FV ++ DR+++K A + S+ +R + + K I+ E + +++ + +AEM+ KAEN++ +++EI +RPKRTWF +E + L K + +K K + Sbjct: 523 YTHRVGRTARAGRKGTSISFVGESMQDRNIVKN-AIQFNSRSVARKIDWDEVEKIQTKIKLNEGAIEEVIEEEKQAREIMRAEMQLNKAENLMKYEKEIKSRPKRTWFKSEVMEHLTKHGKKVNAKKRKAN 652 The following BLAST results are available for this feature:
BLAST of CF504130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 35
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF504130 ID=CF504130; Name=CF504130; organism=Citrus sinensis; type=EST; length=472bpback to top |