CF504130

Overview
NameCF504130
Unique NameCF504130
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length472
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig521 contig Csv1_Contig521:1..472. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504130 vs. ExPASy Swiss-Prot
Match: DDX27_HUMAN (Probable ATP-dependent RNA helicase DDX27 OS=Homo sapiens GN=DDX27 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.135e-17
Identity = 46/114 (40.35%), Postives = 74/114 (64.91%), Query Frame = 3
Query:    9 YVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAH-KEEIFARPKRTWFVTEKEKK 347
            YVHRVGRTARAGR G +V+ V +++R +LK I K A + +K+RI+ +  I K+   IE+ME  V A+LQ       ++++E +   A+ ++   KE +   P+R+WF T++E+K
Sbjct:  547 YVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAVVQEPERSWFQTKEERK 660          
BLAST of CF504130 vs. ExPASy Swiss-Prot
Match: DDX27_BOVIN (Probable ATP-dependent RNA helicase DDX27 OS=Bos taurus GN=DDX27 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.302e-17
Identity = 47/114 (41.23%), Postives = 72/114 (63.16%), Query Frame = 3
Query:    9 YVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAH-KEEIFARPKRTWFVTEKEKK 347
            YVHRVGRTARAGR G +V+ V + +R +LK I K A + +K+RI+ +  I K+   IE+ME  V A+LQ       ++K+E +   A+ ++   KE     P+R+WF T++E+K
Sbjct:  516 YVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQKSEAQINTAQRLLEKGKEAPNPEPERSWFQTKEERK 629          
BLAST of CF504130 vs. ExPASy Swiss-Prot
Match: DDX27_MOUSE (Probable ATP-dependent RNA helicase DDX27 OS=Mus musculus GN=Ddx27 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 4.312e-17
Identity = 46/114 (40.35%), Postives = 73/114 (64.04%), Query Frame = 3
Query:    9 YVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAH-KEEIFARPKRTWFVTEKEKK 347
            YVHRVGRTARAGR G +V+ V + +R +LK I K A + +K+RI+ +  I K+   IE++E  V A+LQ       ++++E +   A+ ++A  KE     P+R+WF T++E+K
Sbjct:  513 YVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKLEKDVYAVLQLEAEEKEMQQSEAQIDTAQRLLAKGKETADQEPERSWFQTKEERK 626          
BLAST of CF504130 vs. ExPASy Swiss-Prot
Match: DRS1_YARLI (ATP-dependent RNA helicase DRS1 OS=Yarrowia lipolytica GN=DRS1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.650e-16
Identity = 49/129 (37.98%), Postives = 75/129 (58.14%), Query Frame = 3
Query:    9 YVHRVGRTARAGREGYAVTFVTDN--DRSL----LKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASI 377
            Y+HRVGRTARAGREG ++T V +   DR++    +K++++    K   R V    + K    IE+  D V  IL        + +AEME  K EN++ +++EI +RP+RTWF   +EKK    +DK ++
Sbjct:  582 YLHRVGRTARAGREGRSITLVGEAAADRAIVREAIKSVSESKQGKAVGRNVDWPEVEKLYSKIEEKGDIVNEILAEEKEEKAMLQAEMEVRKGENLLKYEKEIASRPRRTWFQNAQEKKADETSDKRNL 710          
BLAST of CF504130 vs. ExPASy Swiss-Prot
Match: DRS1_LODEL (ATP-dependent RNA helicase DRS1 OS=Lodderomyces elongisporus GN=DRS1 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 8.991e-15
Identity = 45/131 (34.35%), Postives = 78/131 (59.54%), Query Frame = 3
Query:    9 YVHRVGRTARAGREGYAVTFVTDN--DRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGS 395
            Y HRVGRTARAGR+G +++FV ++  DR+++K  A +  S+  +R +    + K    I+  E  +  +++       + +AEM+  KAEN++ +++EI +RPKRTWF +E  + L     K + +K K +
Sbjct:  523 YTHRVGRTARAGRKGTSISFVGESMQDRNIVKN-AIQFNSRSVARKIDWDEVEKIQTKIKLNEGAIEEVIEEEKQAREIMRAEMQLNKAENLMKYEKEIKSRPKRTWFKSEVMEHLTKHGKKVNAKKRKAN 652          
The following BLAST results are available for this feature:
BLAST of CF504130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
DDX27_HUMAN1.135e-1740.35Probable ATP-dependent RNA helicase DDX27 OS=Homo ... [more]
DDX27_BOVIN3.302e-1741.23Probable ATP-dependent RNA helicase DDX27 OS=Bos t... [more]
DDX27_MOUSE4.312e-1740.35Probable ATP-dependent RNA helicase DDX27 OS=Mus m... [more]
DRS1_YARLI3.650e-1637.98ATP-dependent RNA helicase DRS1 OS=Yarrowia lipoly... [more]
DRS1_LODEL8.991e-1534.35ATP-dependent RNA helicase DRS1 OS=Lodderomyces el... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-618 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504130 ID=CF504130; Name=CF504130; organism=Citrus sinensis; type=EST; length=472bp
TTACTAGCTATGTTCATCGAGTGGGACGTACAGCAAGAGCTGGTAGAGAG
GGATATGCTGTTACTTTTGTGACGGACAATGATCGTTCTCTTTTAAAAGC
CATTGCTAAGAGAGCTGGTTCCAAGTTGAAGAGCCGAATCGTCGCCGAGC
AATCAATTACTAAGTGGTCTAAAATAATTGAACAAATGGAAGATCAAGTA
GCTGCTATTCTTCAAGAAGAAAGGGAAGAGAGAATCCTGAGAAAAGCTGA
AATGGAAGCAACAAAGGCAGAAAATATGATTGCTCATAAGGAAGAAATTT
TTGCACGCCCTAAAAGAACTTGGTTTGTGACAGAAAAGGAGAAAAAGCTT
GCAGTAAAGGCAGATAAGGCATCTATTGAAAAAGGAAAAGGGTCTGGAAA
TGAGGTGACAAGTGCTCAACAGGCTGAAGACCTTAAAATAAAGGAAAAGA
GGAAGCGAGAACGTGAGAAAAA
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