CF504131 | Citrus Genome Database

Overview


Name	CF504131
Unique Name	CF504131
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	342

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CF504131_ssr283	microsatellite	CF504131_ssr283:283..298.	BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10947	contig	Csv1_Contig10947:167..505.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF504131 vs. ExPASy Swiss-Prot
Match: METK2_ATRNU (S-adenosylmethionine synthetase 2 OS=Atriplex nummularia GN=SAMS2 PE=1 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.520e-19
Identity = 26/30 (86.67%), Postives = 27/30 (90.00%), Query Frame = 2

Query:   95 RFLKTAAYGHFGRDDPDFTWEIVKPLK*EK 184
            R+LKTAAYGHFGRDD DFTWE VKPLK EK
Sbjct:  364 RYLKTAAYGHFGRDDADFTWETVKPLKWEK 393

HSP 2 Score: 56.6102 bits (135), Expect = 1.520e-19
Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 1

Query:    1 DKEILKIVKENFDFRPGMISINLDLKRGGNR 93
            DKEILKIVKE FDFRPGMI+INLDL +GG+R
Sbjct:  334 DKEILKIVKETFDFRPGMIAINLDLLKGGSR 364

[Close]

BLAST of CF504131 vs. ExPASy Swiss-Prot
Match: METK1_ATRNU (S-adenosylmethionine synthetase 1 OS=Atriplex nummularia GN=SAMS1 PE=1 SV=2)

HSP 1 Score: 59.3066 bits (142), Expect = 1.520e-19
Identity = 26/30 (86.67%), Postives = 27/30 (90.00%), Query Frame = 2

Query:   95 RFLKTAAYGHFGRDDPDFTWEIVKPLK*EK 184
            R+LKTAAYGHFGRDD DFTWE VKPLK EK
Sbjct:  364 RYLKTAAYGHFGRDDADFTWETVKPLKWEK 393

HSP 2 Score: 56.6102 bits (135), Expect = 1.520e-19
Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 1

Query:    1 DKEILKIVKENFDFRPGMISINLDLKRGGNR 93
            DKEILKIVKE FDFRPGMI+INLDL +GG+R
Sbjct:  334 DKEILKIVKETFDFRPGMIAINLDLLKGGSR 364

[Close]

BLAST of CF504131 vs. ExPASy Swiss-Prot
Match: METK2_DIACA (S-adenosylmethionine synthetase 2 OS=Dianthus caryophyllus GN=SAM2 PE=2 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.977e-19
Identity = 27/31 (87.10%), Postives = 30/31 (96.77%), Query Frame = 1

Query:    1 DKEILKIVKENFDFRPGMISINLDLKRGGNR 93
            D+EILKIVKENFDFRPGMI+I LDLK+GGNR
Sbjct:  334 DREILKIVKENFDFRPGMIAIALDLKKGGNR 364

HSP 2 Score: 56.225 bits (134), Expect = 1.977e-19
Identity = 24/30 (80.00%), Postives = 26/30 (86.67%), Query Frame = 2

Query:   95 RFLKTAAYGHFGRDDPDFTWEIVKPLK*EK 184
            R+LKTAAYGHFGR+DPDFTWE  K LK EK
Sbjct:  364 RYLKTAAYGHFGREDPDFTWEAAKTLKWEK 393

[Close]

BLAST of CF504131 vs. ExPASy Swiss-Prot
Match: METK1_VITVI (S-adenosylmethionine synthetase 1 OS=Vitis vinifera GN=METK1 PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 4.349e-19
Identity = 25/30 (83.33%), Postives = 29/30 (96.67%), Query Frame = 1

Query:    1 DKEILKIVKENFDFRPGMISINLDLKRGGN 90
            DK+IL ++K+NFDFRPGMISINLDLKRGGN
Sbjct:  330 DKDILALIKKNFDFRPGMISINLDLKRGGN 359

HSP 2 Score: 56.6102 bits (135), Expect = 4.349e-19
Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = 2

Query:   95 RFLKTAAYGHFGRDDPDFTWEIVKPLK*EK 184
            RF KTAAYGHFGRDDPDF+WE VK LK EK
Sbjct:  361 RFQKTAAYGHFGRDDPDFSWETVKQLKPEK 390

[Close]

BLAST of CF504131 vs. ExPASy Swiss-Prot
Match: METK3_ARATH (S-adenosylmethionine synthetase 3 OS=Arabidopsis thaliana GN=METK3 PE=1 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 5.655e-19
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = 2

Query:   95 RFLKTAAYGHFGRDDPDFTWEIVKPLK 175
            RF KTAAYGHFGRDDPDFTWE+VKPLK
Sbjct:  361 RFQKTAAYGHFGRDDPDFTWEVVKPLK 387

HSP 2 Score: 53.5286 bits (127), Expect = 5.655e-19
Identity = 23/30 (76.67%), Postives = 28/30 (93.33%), Query Frame = 1

Query:    1 DKEILKIVKENFDFRPGMISINLDLKRGGN 90
            DK+IL ++KE FDFRPGM++INLDLKRGGN
Sbjct:  330 DKDILVLIKEAFDFRPGMMAINLDLKRGGN 359

[Close]

BLAST of CF504131 vs. ExPASy Swiss-Prot
Match: METK4_BRAJU (S-adenosylmethionine synthetase 4 OS=Brassica juncea GN=MSAMS4 PE=2 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 7.354e-19
Identity = 24/27 (88.89%), Postives = 26/27 (96.30%), Query Frame = 2

Query:   95 RFLKTAAYGHFGRDDPDFTWEIVKPLK 175
            RF KTAAYGHFGRDDPDFTWE++KPLK
Sbjct:  361 RFQKTAAYGHFGRDDPDFTWEVIKPLK 387

HSP 2 Score: 53.5286 bits (127), Expect = 7.354e-19
Identity = 23/30 (76.67%), Postives = 28/30 (93.33%), Query Frame = 1

Query:    1 DKEILKIVKENFDFRPGMISINLDLKRGGN 90
            DK+IL ++KE FDFRPGM++INLDLKRGGN
Sbjct:  330 DKDILVLIKEAFDFRPGMMAINLDLKRGGN 359

[Close]

BLAST of CF504131 vs. ExPASy Swiss-Prot
Match: METK3_VITVI (S-adenosylmethionine synthetase 3 OS=Vitis vinifera GN=METK3 PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 9.565e-19
Identity = 25/30 (83.33%), Postives = 29/30 (96.67%), Query Frame = 1

Query:    1 DKEILKIVKENFDFRPGMISINLDLKRGGN 90
            DK+IL ++KENFDFRPGMI+INLDLKRGGN
Sbjct:  330 DKDILDLIKENFDFRPGMIAINLDLKRGGN 359

HSP 2 Score: 55.0694 bits (131), Expect = 9.565e-19
Identity = 24/27 (88.89%), Postives = 24/27 (88.89%), Query Frame = 2

Query:   95 RFLKTAAYGHFGRDDPDFTWEIVKPLK 175
            RF KTAAYGHFGRDDPDFTWE VK LK
Sbjct:  361 RFQKTAAYGHFGRDDPDFTWETVKLLK 387

[Close]

BLAST of CF504131 vs. ExPASy Swiss-Prot
Match: METK1_ACTCH (S-adenosylmethionine synthetase 1 OS=Actinidia chinensis GN=SAM1 PE=2 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 2.103e-18
Identity = 25/30 (83.33%), Postives = 29/30 (96.67%), Query Frame = 1

Query:    1 DKEILKIVKENFDFRPGMISINLDLKRGGN 90
            DK+IL ++KENFDFRPGMI+INLDLKRGGN
Sbjct:  330 DKDILALIKENFDFRPGMIAINLDLKRGGN 359

HSP 2 Score: 53.9138 bits (128), Expect = 2.103e-18
Identity = 23/27 (85.19%), Postives = 24/27 (88.89%), Query Frame = 2

Query:   95 RFLKTAAYGHFGRDDPDFTWEIVKPLK 175
            R+ KTAAYGHFGRDDPDFTWE VK LK
Sbjct:  361 RYQKTAAYGHFGRDDPDFTWETVKILK 387

[Close]

BLAST of CF504131 vs. ExPASy Swiss-Prot
Match: METK4_POPTR (S-adenosylmethionine synthetase 4 OS=Populus trichocarpa GN=METK4 PE=2 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 1.321e-17
Identity = 23/30 (76.67%), Postives = 29/30 (96.67%), Query Frame = 1

Query:    1 DKEILKIVKENFDFRPGMISINLDLKRGGN 90
            D++IL+++KENFDFRPGMI+INLDL RGGN
Sbjct:  330 DRDILELIKENFDFRPGMIAINLDLMRGGN 359

HSP 2 Score: 53.9138 bits (128), Expect = 1.321e-17
Identity = 23/27 (85.19%), Postives = 24/27 (88.89%), Query Frame = 2

Query:   95 RFLKTAAYGHFGRDDPDFTWEIVKPLK 175
            R+ KTAAYGHFGRDDPDFTWE VK LK
Sbjct:  361 RYQKTAAYGHFGRDDPDFTWETVKLLK 387

[Close]

BLAST of CF504131 vs. ExPASy Swiss-Prot
Match: METK3_SOLLC (S-adenosylmethionine synthetase 3 OS=Solanum lycopersicum GN=SAM3 PE=2 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 1.321e-17
Identity = 24/30 (80.00%), Postives = 28/30 (93.33%), Query Frame = 1

Query:    1 DKEILKIVKENFDFRPGMISINLDLKRGGN 90
            DK+IL ++KENFDFRPGM+SINLDL RGGN
Sbjct:  330 DKDILVLIKENFDFRPGMMSINLDLLRGGN 359

HSP 2 Score: 54.299 bits (129), Expect = 1.321e-17
Identity = 23/27 (85.19%), Postives = 24/27 (88.89%), Query Frame = 2

Query:   95 RFLKTAAYGHFGRDDPDFTWEIVKPLK 175
            R+ KTAAYGHFGRDDPDFTWE VK LK
Sbjct:  361 RYQKTAAYGHFGRDDPDFTWETVKVLK 387

The following BLAST results are available for this feature:

BLAST of CF504131 vs. ExPASy Swiss-Prot

BLAST of CF504131 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79


Match Name	E-value	Identity	Description
METK2_ATRNU	1.520e-19	86.67	S-adenosylmethionine synthetase 2 OS=Atriplex numm...	[more]
METK1_ATRNU	1.520e-19	86.67	S-adenosylmethionine synthetase 1 OS=Atriplex numm...	[more]
METK2_DIACA	1.977e-19	87.10	S-adenosylmethionine synthetase 2 OS=Dianthus cary...	[more]
METK1_VITVI	4.349e-19	83.33	S-adenosylmethionine synthetase 1 OS=Vitis vinifer...	[more]
METK3_ARATH	5.655e-19	92.59	S-adenosylmethionine synthetase 3 OS=Arabidopsis t...	[more]
METK4_BRAJU	7.354e-19	88.89	S-adenosylmethionine synthetase 4 OS=Brassica junc...	[more]
METK3_VITVI	9.565e-19	83.33	S-adenosylmethionine synthetase 3 OS=Vitis vinifer...	[more]
METK1_ACTCH	2.103e-18	83.33	S-adenosylmethionine synthetase 1 OS=Actinidia chi...	[more]
METK4_POPTR	1.321e-17	76.67	S-adenosylmethionine synthetase 4 OS=Populus trich...	[more]
METK3_SOLLC	1.321e-17	80.00	S-adenosylmethionine synthetase 3 OS=Solanum lycop...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_119000-619 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_B11 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF504131 ID=CF504131; Name=CF504131; organism=Citrus sinensis; type=EST; length=342bp
GACAAGGAAATTTTGAAGATTGTGAAGGAGAATTTTGATTTTAGGCCTGG
GATGATTTCTATTAATCTTGATCTCAAGAGGGGTGGCAACCGGCAGGTTC
TTGAAGACTGCCGCTTATGGGCACTTTGGCAGAGATGATCCTGATTTCAC
TTGGGAGATTGTTAAGCCACTCAAGTAGGAGAAACTTCCAGCTTAAACTA
ATCAAGGATGAGCTGCTGGCCTCTCATTGGTTCTTATATATGCTTACTTT
TTTTTTTACTTTTGTTTCAGTTACATGAATGTTTTCTTTCTTTCTTTCTT
TTTCTTTTCCTTTTTTTTTTTTTTTATAAATATGTTTAATGG