CF504141

Overview
NameCF504141
Unique NameCF504141
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length481
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13838 contig Csv1_Contig13838:9..489. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_METVA (30S ribosomal protein S17P OS=Methanococcus vannielii GN=rps17p PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.858e-16
Identity = 39/96 (40.62%), Postives = 57/96 (59.38%), Query Frame = 1
Query:  193 SIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480
            +IG+  K P    E    D  CPF GT+S+RG+I  G     K + TI+++R    ++ KY+RYEKR +++ AH  PC   K GD V + +CRP+S
Sbjct:    3 NIGIDVKAPENVCE----DVNCPFHGTLSVRGQIFEGVVSGDKGHNTIVIKREVTGYISKYERYEKRTTSLVAHNPPCINAKTGDVVKVMECRPVS 94          
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_METMP (30S ribosomal protein S17P OS=Methanococcus maripaludis GN=rps17p PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.122e-15
Identity = 39/96 (40.62%), Postives = 58/96 (60.42%), Query Frame = 1
Query:  193 SIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480
            +IG+  K P    E    D  CPF GT+S+RG+I  G   S K + TI+++R    ++ KY+RYEKR +++ AH   C + K GD V + +CRP+S
Sbjct:    3 NIGIDVKAPENVCE----DPNCPFHGTLSVRGQIFEGIVTSDKGHDTIVIKREVTGYISKYERYEKRTTSLVAHNPACIKAKVGDTVKVMECRPIS 94          
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_PYRKO (30S ribosomal protein S17P OS=Pyrococcus kodakaraensis GN=rps17p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.466e-15
Identity = 40/97 (41.24%), Postives = 55/97 (56.70%), Query Frame = 1
Query:  190 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480
            + IGL  + P E       D KCP+ G + I GR + G   S K  +T++V R Y H++KKY+RYE R S + AH   C   K GD V+I + RP+S
Sbjct:    2 REIGLRVQPPAEVCN----DPKCPWHGNLKIHGRYVEGIVVSDKGKKTVVVERQYYHYLKKYERYELRKSKVHAHNPECINAKVGDKVLIAETRPIS 94          
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_HALWD (30S ribosomal protein S17P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps17p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.466e-15
Identity = 45/96 (46.88%), Postives = 56/96 (58.33%), Query Frame = 1
Query:  193 SIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480
            +IGL    P    E +  D  CPF G++S+RG+ L GT  S  M++T+IV R Y   V KY R  KR S IPAH  PC  + EGD V I + RPLS
Sbjct:    2 AIGLNVTEP----EVSCADTNCPFHGSLSVRGQTLEGTVASTDMDKTVIVEREYDVRVPKYDRLMKRRSRIPAHAPPCVDLAEGDTVRIAETRPLS 93          
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_PYRFU (30S ribosomal protein S17P OS=Pyrococcus furiosus GN=rps17p PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.915e-15
Identity = 41/97 (42.27%), Postives = 54/97 (55.67%), Query Frame = 1
Query:  190 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480
            + IGL  + P E  +    D KCP+ G + I GR+  G   S K  +T+ V R Y  ++ KY+RYE R S I AH  PC   K GD V+I + RPLS
Sbjct:    3 RDIGLRVQPPAEKCD----DPKCPWHGNLKIHGRVFEGIVVSDKPRKTVTVERQYYFYLNKYERYELRRSKIHAHNPPCINAKVGDKVLIAETRPLS 95          
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_PICTO (30S ribosomal protein S17P OS=Picrophilus torridus GN=rps17p PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.915e-15
Identity = 41/97 (42.27%), Postives = 58/97 (59.79%), Query Frame = 1
Query:  190 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480
            ++IG+  K P    E T  D KCPF G + I G+I+ GT  S KMN +I+++R     +KKY+RYE + S   AH+  C  V+ GD V I +CR L+
Sbjct:    2 ENIGIDVKKP----ERTCNDPKCPFHGNLRIHGQIIVGTVVSTKMNGSIVLKRESRRLIKKYERYETKISKFHAHLPGCIDVRPGDRVKIAECRKLA 94          
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_METJA (30S ribosomal protein S17P OS=Methanocaldococcus jannaschii GN=rps17p PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.915e-15
Identity = 36/97 (37.11%), Postives = 59/97 (60.82%), Query Frame = 1
Query:  190 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480
            ++IG+  K P    +    DK CPF G + +RG+   G   S K ++T+I++R  + ++KKY+RYE+R + + AH  PC   + GD V + +CRP+S
Sbjct:    4 RNIGIQVKAPEVECD----DKNCPFHGNLPVRGQSFVGVVVSDKPHKTVIIKREVVKYIKKYERYERRTTKLAAHNPPCIHARVGDIVRVMECRPIS 96          
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_HALMA (30S ribosomal protein S17P OS=Haloarcula marismortui GN=rps17p PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 1.915e-15
Identity = 41/96 (42.71%), Postives = 55/96 (57.29%), Query Frame = 1
Query:  193 SIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480
            ++GL  + P E    T  D+ CPF G +S+RG+ L G   S  M +T++V R Y   V KY R+ KR S +PAH   C  +  GD V I +CRPLS
Sbjct:    2 ALGLNVQEPEE----TCADQNCPFHGELSVRGQTLNGEVASTDMEKTVVVEREYDVKVPKYDRFMKRRSRVPAHAPDCLDLAVGDTVTIAECRPLS 93          
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_AERPE (30S ribosomal protein S17P OS=Aeropyrum pernix GN=rps17p PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 7.276e-15
Identity = 35/78 (44.87%), Postives = 50/78 (64.10%), Query Frame = 1
Query:  247 DKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480
            D  CP+ GT+ +RG +L G    A+  R ++V+  YL++ KKY RYE+R   I AH+  C  VKEGD V+IG+  P+S
Sbjct:   24 DPNCPWHGTLRVRGVLLEGVVAKARARRMVVVQHVYLYYDKKYNRYERRSKKIHAHLPDCISVKEGDVVVIGETMPIS 101          
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_ARCFU (30S ribosomal protein S17P OS=Archaeoglobus fulgidus GN=rps17p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.611e-14
Identity = 37/97 (38.14%), Postives = 56/97 (57.73%), Query Frame = 1
Query:  190 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480
            + IG+  K P    E    D+ CPF GT+S+RG++L G        +T ++ R  + +V K++RY K+ S + AH   C R + GD V IG+CRP+S
Sbjct:    2 RDIGIDVKPPERECE----DENCPFHGTLSVRGQLLRGKVVKV-YGKTAVIERELIRYVPKFERYMKKRSKLHAHNPRCIRARPGDIVTIGECRPIS 93          
The following BLAST results are available for this feature:
BLAST of CF504141 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RS17_METVA3.858e-1640.6330S ribosomal protein S17P OS=Methanococcus vannie... [more]
RS17_METMP1.122e-1540.6330S ribosomal protein S17P OS=Methanococcus maripa... [more]
RS17_PYRKO1.466e-1541.2430S ribosomal protein S17P OS=Pyrococcus kodakarae... [more]
RS17_HALWD1.466e-1546.8830S ribosomal protein S17P OS=Haloquadratum walsby... [more]
RS17_PYRFU1.915e-1542.2730S ribosomal protein S17P OS=Pyrococcus furiosus ... [more]
RS17_PICTO1.915e-1542.2730S ribosomal protein S17P OS=Picrophilus torridus... [more]
RS17_METJA1.915e-1537.1130S ribosomal protein S17P OS=Methanocaldococcus j... [more]
RS17_HALMA1.915e-1542.7130S ribosomal protein S17P OS=Haloarcula marismort... [more]
RS17_AERPE7.276e-1544.8730S ribosomal protein S17P OS=Aeropyrum pernix GN=... [more]
RS17_ARCFU3.611e-1438.1430S ribosomal protein S17P OS=Archaeoglobus fulgid... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-629 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504141 ID=CF504141; Name=CF504141; organism=Citrus sinensis; type=EST; length=481bp
ATTTAGGGTTTTCTGCATTGTGTTATCCACCTCCGCCCAGTGCGTTCATC
ATCCTCAACAACTCAGCCCCGAAATCCAGCCATGGCGGAGCAGACCGAGA
AGGCGTTTTTGAAGCAGCCCAAGGTGTTTCTCAGCTCGAAGAAGGCAGGA
AAAGGAAAGAGGCCAGGAAAGGGAGGGAATCGATTCTGGAAGAGCATAGG
CTTGGGATTCAAGACTCCCAGAGAGGCAATTGAAGGGACTTACATTGATA
AGAAGTGTCCGTTCACCGGCACTGTTTCCATCAGGGGTCGTATCCTTGCT
GGTACTTGCCACAGTGCTAAGATGAACAGAACCATCATCGTTAGGCGTAA
CTACCTTCACTTTGTGAAGAAATATCAGAGGTATGAGAAGAGGCACTCTA
ACATTCCAGCACACATCTCACCTTGTTTCCGTGTGAAAGAGGGAGACCAT
GTTATCATTGGCCAGTGCAGGCCTTTGTCAA
back to top