CF504141
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_NITMS (30S ribosomal protein S17P OS=Nitrosopumilus maritimus (strain SCM1) GN=rps17p PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 2.341e-13 Identity = 35/97 (36.08%), Postives = 59/97 (60.82%), Query Frame = 1 Query: 190 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480 ++IGL K P+ E DK CPF G ++IRG++ G +K +TI ++++ + K++RY + S+I AH+ C V+ GD+V+ +CRP+S Sbjct: 3 RNIGLKVKEPKRECE----DKNCPFHGELAIRGKLFDGKVTGSKAKQTITLQKDAPVYFNKFKRYARGKSSIHAHVPGCIDVESGDNVLTAECRPIS 95
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17L_METAC (Putative 30S ribosomal protein S17P-like OS=Methanosarcina acetivorans GN=MA_2024 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 3.380e-12 Identity = 39/98 (39.80%), Postives = 56/98 (57.14%), Query Frame = 1 Query: 190 KSIGL-GFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480 + IG+ G K P E D +CPF G +S+RG+IL G S KM + I+++R + KYQR ++ S I A+ PC K GD + I +CRPL+ Sbjct: 2 RDIGINGIKLPTEDCN----DPECPFHGKLSVRGQILKGIVISDKMTKNIVMKRYREKWSYKYQRKQRVSSKIHAYSPPCMEAKIGDIITIAECRPLN 95
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_THEAC (30S ribosomal protein S17P OS=Thermoplasma acidophilum GN=rps17p PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 5.765e-12 Identity = 33/99 (33.33%), Postives = 53/99 (53.54%), Query Frame = 1 Query: 184 FWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480 + ++IGL K P E D CP+ G +S+RG++L G SA M ++ +V R Y ++ KY+R + H+ C ++K GD V +CR L+ Sbjct: 2 YTRNIGLDVKLP----ESECNDPHCPYHGKLSVRGQVLTGKVVSANMTKSAVVAREYQQYIPKYERKATKIKKYHVHVPDCIKIKPGDTVRFAECRKLA 96
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_PYRAE (30S ribosomal protein S17P OS=Pyrobaculum aerophilum GN=rps17p PE=3 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 9.833e-12 Identity = 33/97 (34.02%), Postives = 54/97 (55.67%), Query Frame = 1 Query: 190 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480 K+IG+ P ++ D CP+ G + +R ++L T +M++ +V +LH+++KY RYE+R + + C VK GD VII + RPLS Sbjct: 4 KNIGIPHVLPPASVCD---DPLCPWHGHLKVRLKLLEVTVEKVRMHKAAVVIHEWLHYIRKYNRYERRRKRMRVRVPECIEVKPGDKVIIAETRPLS 97 The following BLAST results are available for this feature:
BLAST of CF504141 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 54
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504141 ID=CF504141; Name=CF504141; organism=Citrus sinensis; type=EST; length=481bpback to top |