CF504155

Overview
NameCF504155
Unique NameCF504155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length276
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504155 vs. ExPASy Swiss-Prot
Match: HS90A_CHICK (Heat shock protein HSP 90-alpha OS=Gallus gallus GN=HSP90AA1 PE=3 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 4.228e-22
Identity = 54/67 (80.60%), Postives = 58/67 (86.57%), Query Frame = 2
Query:   71 VERQVVSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDA 271
            V+ Q   M  E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISNSSDALDKIR+ESLTD SKLD+
Sbjct:    5 VQTQDQPMEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDS 71          
BLAST of CF504155 vs. ExPASy Swiss-Prot
Match: H90A1_DANRE (Heat shock protein HSP 90-alpha 1 OS=Danio rerio GN=hsp90a.1 PE=2 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 1.230e-21
Identity = 52/60 (86.67%), Postives = 55/60 (91.67%), Query Frame = 2
Query:   92 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDA 271
            M  E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISNSSDALDKIR+ESLTD SKLD+
Sbjct:   10 MEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDS 69          
BLAST of CF504155 vs. ExPASy Swiss-Prot
Match: HSP83_DROVI (Heat shock protein 83 (Fragment) OS=Drosophila virilis GN=Hsp83 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.741e-21
Identity = 51/60 (85.00%), Postives = 55/60 (91.67%), Query Frame = 2
Query:   92 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDA 271
            M  E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDALDKIR+ESLTD SKLD+
Sbjct:    1 MPEEAETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDS 60          
BLAST of CF504155 vs. ExPASy Swiss-Prot
Match: HSP83_DROSI (Heat shock protein 83 (Fragment) OS=Drosophila simulans GN=Hsp83 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.741e-21
Identity = 51/60 (85.00%), Postives = 55/60 (91.67%), Query Frame = 2
Query:   92 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDA 271
            M  E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDALDKIR+ESLTD SKLD+
Sbjct:    1 MPEEAETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDS 60          
BLAST of CF504155 vs. ExPASy Swiss-Prot
Match: HSP83_DROPS (Heat shock protein 83 OS=Drosophila pseudoobscura pseudoobscura GN=Hsp83 PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 2.741e-21
Identity = 51/60 (85.00%), Postives = 55/60 (91.67%), Query Frame = 2
Query:   92 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDA 271
            M  E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDALDKIR+ESLTD SKLD+
Sbjct:    1 MPEEAETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDS 60          
BLAST of CF504155 vs. ExPASy Swiss-Prot
Match: HSP83_DROPE (Heat shock protein 83 (Fragment) OS=Drosophila persimilis GN=Hsp83 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.741e-21
Identity = 51/60 (85.00%), Postives = 55/60 (91.67%), Query Frame = 2
Query:   92 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDA 271
            M  E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDALDKIR+ESLTD SKLD+
Sbjct:    1 MPEEAETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDS 60          
BLAST of CF504155 vs. ExPASy Swiss-Prot
Match: HSP83_DROMI (Heat shock protein 83 (Fragment) OS=Drosophila miranda GN=Hsp83 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.741e-21
Identity = 51/60 (85.00%), Postives = 55/60 (91.67%), Query Frame = 2
Query:   92 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDA 271
            M  E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDALDKIR+ESLTD SKLD+
Sbjct:    1 MPEEAETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDS 60          
BLAST of CF504155 vs. ExPASy Swiss-Prot
Match: HSP83_DROME (Heat shock protein 83 OS=Drosophila melanogaster GN=Hsp83 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.741e-21
Identity = 51/60 (85.00%), Postives = 55/60 (91.67%), Query Frame = 2
Query:   92 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDA 271
            M  E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDALDKIR+ESLTD SKLD+
Sbjct:    1 MPEEAETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDS 60          
BLAST of CF504155 vs. ExPASy Swiss-Prot
Match: HSP83_DROAV (Heat shock protein 83 OS=Drosophila auraria GN=Hsp83 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.741e-21
Identity = 51/60 (85.00%), Postives = 55/60 (91.67%), Query Frame = 2
Query:   92 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDA 271
            M  E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDALDKIR+ESLTD SKLD+
Sbjct:    1 MPEEAETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDS 60          
BLAST of CF504155 vs. ExPASy Swiss-Prot
Match: HS90A_RAT (Heat shock protein HSP 90-alpha OS=Rattus norvegicus GN=Hsp90aa1 PE=1 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 3.579e-21
Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = 2
Query:  101 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDA 271
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISNSSDALDKIR+ESLTD SKLD+
Sbjct:   16 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDS 72          
The following BLAST results are available for this feature:
BLAST of CF504155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 286
Match NameE-valueIdentityDescription
HS90A_CHICK4.228e-2280.60Heat shock protein HSP 90-alpha OS=Gallus gallus G... [more]
H90A1_DANRE1.230e-2186.67Heat shock protein HSP 90-alpha 1 OS=Danio rerio G... [more]
HSP83_DROVI2.741e-2185.00Heat shock protein 83 (Fragment) OS=Drosophila vir... [more]
HSP83_DROSI2.741e-2185.00Heat shock protein 83 (Fragment) OS=Drosophila sim... [more]
HSP83_DROPS2.741e-2185.00Heat shock protein 83 OS=Drosophila pseudoobscura ... [more]
HSP83_DROPE2.741e-2185.00Heat shock protein 83 (Fragment) OS=Drosophila per... [more]
HSP83_DROMI2.741e-2185.00Heat shock protein 83 (Fragment) OS=Drosophila mir... [more]
HSP83_DROME2.741e-2185.00Heat shock protein 83 OS=Drosophila melanogaster G... [more]
HSP83_DROAV2.741e-2185.00Heat shock protein 83 OS=Drosophila auraria GN=Hsp... [more]
HS90A_RAT3.579e-2189.47Heat shock protein HSP 90-alpha OS=Rattus norvegic... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-643 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504155 ID=CF504155; Name=CF504155; organism=Citrus sinensis; type=EST; length=276bp
CTCTCTCTCTCTCTGTCTCTCGTTCGCTTCCAAAACCCCTAGTTTATAAT
TCAGAAGAGATCGTTTTTTGGTTGAACGGCAGGTCGTTTCGATGGCATCA
GAGACAGAGACGTTTGCCTTTCAGGCTGAGATCAACCAGTTGTTGAGTTT
GATCATCAACACCTTTTACAGCAACAAGGAGATCTTTCTTCGTGAGCTCA
TCAGCAACTCCTCCGATGCATTGGATAAGATCAGATTTGAAAGCTTGACA
GACAAGAGCAAGCTAGATGCCCAACC
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