CF504155

Overview
NameCF504155
Unique NameCF504155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length276
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF504155_ssr1 microsatellite CF504155_ssr1:1..14. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11542 contig Csv1_Contig11542:30..305. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504155 vs. ExPASy Swiss-Prot
Match: H90B2_HUMAN (Putative heat shock protein HSP 90-beta 2 OS=Homo sapiens GN=HSP90AB2P PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 6.751e-20
Identity = 49/57 (85.96%), Postives = 53/57 (92.98%), Query Frame = 2
Query:  101 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDA 271
            E ETFAFQAEI QL+SLIINTFYSNKEIFL ELISN+SDALDKIR+ESLTD SKLD+
Sbjct:   11 EVETFAFQAEIAQLMSLIINTFYSNKEIFLWELISNASDALDKIRYESLTDPSKLDS 67          
BLAST of CF504155 vs. ExPASy Swiss-Prot
Match: HSP83_TRYBB (Heat shock protein 83 OS=Trypanosoma brucei brucei GN=HSP83 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.350e-19
Identity = 47/54 (87.04%), Postives = 52/54 (96.30%), Query Frame = 2
Query:  104 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKL 265
            TETFAFQAEINQL+SLIINTFYSNKEIFLRELISNSSDA DKIR++SLT++S L
Sbjct:    2 TETFAFQAEINQLMSLIINTFYSNKEIFLRELISNSSDACDKIRYQSLTNQSVL 55          
BLAST of CF504155 vs. ExPASy Swiss-Prot
Match: HSP83_LEIIN (Heat shock protein 83-1 OS=Leishmania infantum GN=HSP83-1 PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 3.350e-19
Identity = 47/54 (87.04%), Postives = 51/54 (94.44%), Query Frame = 2
Query:  104 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKL 265
            TETFAFQAEINQL+SLIINTFYSNKEIFLRELISN+SDA DKIR++SLTD S L
Sbjct:    2 TETFAFQAEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVL 55          
BLAST of CF504155 vs. ExPASy Swiss-Prot
Match: HSC90_DICDI (Heat shock cognate 90 kDa protein OS=Dictyostelium discoideum GN=hspD PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 4.376e-19
Identity = 45/59 (76.27%), Postives = 54/59 (91.53%), Query Frame = 2
Query:   98 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQ 274
            S+ E F FQAEINQL+SLIINTFYSNKE+FLRELISN+SDALDKIR++SLTD S L+++
Sbjct:    4 SQVERFTFQAEINQLMSLIINTFYSNKEVFLRELISNASDALDKIRYQSLTDASVLESK 62          
BLAST of CF504155 vs. ExPASy Swiss-Prot
Match: HSP90_CAEEL (Heat shock protein 90 OS=Caenorhabditis elegans GN=daf-21 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.464e-19
Identity = 45/59 (76.27%), Postives = 54/59 (91.53%), Query Frame = 2
Query:   92 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLD 268
            M+   ETFAFQAEI QL+SLIINTFYSNKEI+LRELISN+SDALDKIR+++LT+ S+LD
Sbjct:    1 MSENAETFAFQAEIAQLMSLIINTFYSNKEIYLRELISNASDALDKIRYQALTEPSELD 59          
BLAST of CF504155 vs. ExPASy Swiss-Prot
Match: HSP90_CAEBR (Heat shock protein 90 OS=Caenorhabditis briggsae GN=daf-21 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.464e-19
Identity = 45/59 (76.27%), Postives = 54/59 (91.53%), Query Frame = 2
Query:   92 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLD 268
            M+   ETFAFQAEI QL+SLIINTFYSNKEI+LRELISN+SDALDKIR+++LT+ S+LD
Sbjct:    1 MSENAETFAFQAEIAQLMSLIINTFYSNKEIYLRELISNASDALDKIRYQALTEPSELD 59          
BLAST of CF504155 vs. ExPASy Swiss-Prot
Match: HSP85_TRYCR (Heat shock-like 85 kDa protein OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.464e-19
Identity = 46/54 (85.19%), Postives = 52/54 (96.30%), Query Frame = 2
Query:  104 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKL 265
            TETFAFQAEINQL+SLIINTFYSNKEIFLRELISNSSDA DKIR++SLT+++ L
Sbjct:    2 TETFAFQAEINQLMSLIINTFYSNKEIFLRELISNSSDACDKIRYQSLTNQAVL 55          
BLAST of CF504155 vs. ExPASy Swiss-Prot
Match: HSP90_PODAN (Heat shock protein 90 homolog OS=Podospora anserina GN=MOD-E PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.748e-19
Identity = 46/54 (85.19%), Postives = 51/54 (94.44%), Query Frame = 2
Query:  107 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLD 268
            ETF FQAEI+QLLSLIINT YSNKEIFLREL+SN+SDALDKIR+ESL+D SKLD
Sbjct:    3 ETFEFQAEISQLLSLIINTVYSNKEIFLRELVSNASDALDKIRYESLSDPSKLD 56          
BLAST of CF504155 vs. ExPASy Swiss-Prot
Match: HSP83_DROPB (Heat shock protein 83 (Fragment) OS=Drosophila pseudoobscura bogotana GN=Hsp83 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.273e-18
Identity = 47/58 (81.03%), Postives = 50/58 (86.21%), Query Frame = 2
Query:   92 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKL 265
            M  E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDALDKIR+ S TD  KL
Sbjct:    1 MPEEAETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYXSXTDPXKL 58          
BLAST of CF504155 vs. ExPASy Swiss-Prot
Match: HSP83_LEIAM (Heat shock protein 83 OS=Leishmania amazonensis GN=HSP83 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.663e-18
Identity = 45/54 (83.33%), Postives = 51/54 (94.44%), Query Frame = 2
Query:  104 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKL 265
            TETFAFQAEINQL+SLIINTFYSNKEIFLR++ISN+SDA DKIR++SLTD S L
Sbjct:    2 TETFAFQAEINQLMSLIINTFYSNKEIFLRDVISNASDACDKIRYQSLTDPSVL 55          
The following BLAST results are available for this feature:
BLAST of CF504155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 286
Match NameE-valueIdentityDescription
H90B2_HUMAN6.751e-2085.96Putative heat shock protein HSP 90-beta 2 OS=Homo ... [more]
HSP83_TRYBB3.350e-1987.04Heat shock protein 83 OS=Trypanosoma brucei brucei... [more]
HSP83_LEIIN3.350e-1987.04Heat shock protein 83-1 OS=Leishmania infantum GN=... [more]
HSC90_DICDI4.376e-1976.27Heat shock cognate 90 kDa protein OS=Dictyostelium... [more]
HSP90_CAEEL7.464e-1976.27Heat shock protein 90 OS=Caenorhabditis elegans GN... [more]
HSP90_CAEBR7.464e-1976.27Heat shock protein 90 OS=Caenorhabditis briggsae G... [more]
HSP85_TRYCR7.464e-1985.19Heat shock-like 85 kDa protein OS=Trypanosoma cruz... [more]
HSP90_PODAN9.748e-1985.19Heat shock protein 90 homolog OS=Podospora anserin... [more]
HSP83_DROPB1.273e-1881.03Heat shock protein 83 (Fragment) OS=Drosophila pse... [more]
HSP83_LEIAM1.663e-1883.33Heat shock protein 83 OS=Leishmania amazonensis GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-643 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504155 ID=CF504155; Name=CF504155; organism=Citrus sinensis; type=EST; length=276bp
CTCTCTCTCTCTCTGTCTCTCGTTCGCTTCCAAAACCCCTAGTTTATAAT
TCAGAAGAGATCGTTTTTTGGTTGAACGGCAGGTCGTTTCGATGGCATCA
GAGACAGAGACGTTTGCCTTTCAGGCTGAGATCAACCAGTTGTTGAGTTT
GATCATCAACACCTTTTACAGCAACAAGGAGATCTTTCTTCGTGAGCTCA
TCAGCAACTCCTCCGATGCATTGGATAAGATCAGATTTGAAAGCTTGACA
GACAAGAGCAAGCTAGATGCCCAACC
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