CF504162

Overview
NameCF504162
Unique NameCF504162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length411
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9584 contig Csv1_Contig9584:74..484. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS18_CAPHI (40S ribosomal protein S18 OS=Capra hircus GN=RPS18 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 5.688e-43
Identity = 79/117 (67.52%), Postives = 103/117 (88.03%), Query Frame = 1
Query:   61 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E+++++ ++ NPRQ+KIPDWFLNRQKD KDG+YSQV++N LD KLR+DLERLKKI
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKI 117          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS18_CANFA (40S ribosomal protein S18 OS=Canis familiaris GN=RPS18 PE=1 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 5.688e-43
Identity = 79/117 (67.52%), Postives = 103/117 (88.03%), Query Frame = 1
Query:   61 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E+++++ ++ NPRQ+KIPDWFLNRQKD KDG+YSQV++N LD KLR+DLERLKKI
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKI 117          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS18_BOVIN (40S ribosomal protein S18 OS=Bos taurus GN=RPS18 PE=2 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 5.688e-43
Identity = 79/117 (67.52%), Postives = 103/117 (88.03%), Query Frame = 1
Query:   61 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E+++++ ++ NPRQ+KIPDWFLNRQKD KDG+YSQV++N LD KLR+DLERLKKI
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKI 117          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS18_SCHPO (40S ribosomal protein S18 OS=Schizosaccharomyces pombe GN=rps18a PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.267e-42
Identity = 79/117 (67.52%), Postives = 100/117 (85.47%), Query Frame = 1
Query:   61 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411
            MSLV  ++FQHILR+LNTNVDGK K+MFA+T IKG+GRR ANIVCKKAD+DM+KRAGEL+  EL++++ ++ NP QFKIP WFLNRQKD  DG+  Q+++N +D KLR+DLERLKKI
Sbjct:    1 MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELTTEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKI 117          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS18_SPOFR (40S ribosomal protein S18 OS=Spodoptera frugiperda GN=RpS18 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 2.823e-42
Identity = 76/117 (64.96%), Postives = 103/117 (88.03%), Query Frame = 1
Query:   61 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411
            MSLV  + FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +  E+++++ +++NPRQ+KIPDWFLNRQKD  DG+YSQ+ S+ LD KLR+DLERLKKI
Sbjct:    1 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKI 117          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS18_DROME (40S ribosomal protein S18 OS=Drosophila melanogaster GN=RpS18 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.311e-39
Identity = 74/117 (63.25%), Postives = 98/117 (83.76%), Query Frame = 1
Query:   61 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411
            MSLV  E FQHILR++NTN+DGK+K+  A+T+IKG+GRR +NIV KKADVD+ KRAGE +  E+D+++ +++NP Q+K+P+WFLNRQKD  DG+Y Q+ S+ LD KLRDDLERLKKI
Sbjct:    1 MSLVIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECTEEEVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKI 117          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS18_DICDI (40S ribosomal protein S18 OS=Dictyostelium discoideum GN=rps18 PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.713e-39
Identity = 72/116 (62.07%), Postives = 96/116 (82.76%), Query Frame = 1
Query:   64 SLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411
            SLV   +FQHI+R+ NTNVDG++KI +ALT +KG+GRR AN+VCKKAD+D +KRAGELS  E+++L  ++ +PRQ+ IP WFLNRQKD KDG+YS  ++N +D+K R+DLERLKKI
Sbjct:    4 SLVFQGEFQHIIRIYNTNVDGRRKIQYALTCVKGVGRRFANLVCKKADIDTSKRAGELSKDEVERLTTIMNHPRQYNIPTWFLNRQKDIKDGKYSHCLANQIDVKFREDLERLKKI 119          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS18_YEAST (40S ribosomal protein S18 OS=Saccharomyces cerevisiae GN=RPS18A PE=1 SV=4)

HSP 1 Score: 150.984 bits (380), Expect = 1.772e-36
Identity = 73/119 (61.34%), Postives = 95/119 (79.83%), Query Frame = 1
Query:   61 MSLVANED--FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411
            MSLV  E   FQHILR+LNTNVDG  KI++ALT+IKG+GRR +N+VCKKADVD++KRAGEL+  EL++++ ++ NP  +KIP WFLNRQ D  DG+    ++N ++ KLRDDLERLKKI
Sbjct:    1 MSLVVQEQGSFQHILRLLNTNVDGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQNPTHYKIPAWFLNRQNDITDGKDYHTLANNVESKLRDDLERLKKI 119          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS18_ENTHI (40S ribosomal protein S18 OS=Entamoeba histolytica GN=RPS18 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.517e-32
Identity = 59/116 (50.86%), Postives = 93/116 (80.17%), Query Frame = 1
Query:   64 SLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411
            ++ +  +FQH+LRV NTN+DG++K+ +ALT IKG GRR A +VCK+A +D+NKRAG ++ AE+++++ ++     +KIP WFLNRQKD KDG+ SQ+++NA++ +LR+D+E LKK+
Sbjct:    3 TVTSESEFQHMLRVCNTNLDGRRKVPYALTGIKGCGRRYAYLVCKRAGIDVNKRAGLMTPAEIEKIVDILTTQLNYKIPVWFLNRQKDNKDGKDSQLIANAVETRLREDIEALKKM 118          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_METST (30S ribosomal protein S13P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps13p PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.902e-22
Identity = 46/114 (40.35%), Postives = 74/114 (64.91%), Query Frame = 1
Query:   70 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411
            +A ++F+H++R+   +VDG   I  ALT I+GIG+  A  +CK  D+D + + G +    + Q+  V+ NP++F IP+WFLNR+ DY+ G    ++ + L+M LRDDL R+K I
Sbjct:    1 MAEQEFRHMVRITRKDVDGNSTIATALTEIRGIGKAFAIAICKVLDLDQDAQIGYIDDESVKQIEAVLENPQEFGIPEWFLNRRNDYETGETKHLIESDLNMTLRDDLNRMKMI 114          
The following BLAST results are available for this feature:
BLAST of CF504162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
RS18_CAPHI5.688e-4367.5240S ribosomal protein S18 OS=Capra hircus GN=RPS18... [more]
RS18_CANFA5.688e-4367.5240S ribosomal protein S18 OS=Canis familiaris GN=R... [more]
RS18_BOVIN5.688e-4367.5240S ribosomal protein S18 OS=Bos taurus GN=RPS18 P... [more]
RS18_SCHPO1.267e-4267.5240S ribosomal protein S18 OS=Schizosaccharomyces p... [more]
RS18_SPOFR2.823e-4264.9640S ribosomal protein S18 OS=Spodoptera frugiperda... [more]
RS18_DROME1.311e-3963.2540S ribosomal protein S18 OS=Drosophila melanogast... [more]
RS18_DICDI1.713e-3962.0740S ribosomal protein S18 OS=Dictyostelium discoid... [more]
RS18_YEAST1.772e-3661.3440S ribosomal protein S18 OS=Saccharomyces cerevis... [more]
RS18_ENTHI4.517e-3250.8640S ribosomal protein S18 OS=Entamoeba histolytica... [more]
RS13_METST1.902e-2240.3530S ribosomal protein S13P OS=Methanosphaera stadt... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-650 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504162 ID=CF504162; Name=CF504162; organism=Citrus sinensis; type=EST; length=411bp
AGAAGGCGAAGGCACAAAAGTCAACCATAAAGGAAAAAAGAGAAACGAAC
ATCTCCAGCCATGTCTCTGGTAGCCAACGAGGATTTTCAACACATTCTTC
GTGTTCTGAACACGAATGTTGATGGGAAACAAAAGATCATGTTTGCTCTC
ACATCCATTAAGGGTATCGGTCGCCGTTTGGCCAATATTGTCTGCAAGAA
AGCTGATGTCGACATGAACAAAAGAGCTGGTGAGCTCTCTGCCGCTGAGC
TTGACCAACTGATGGTGGTTGTGGCAAATCCACGCCAGTTTAAGATCCCA
GACTGGTTTCTTAACAGGCAAAAGGATTACAAGGATGGGAGGTACTCCCA
GGTCGTGTCTAATGCATTGGACATGAAGCTTAGGGATGATCTTGAGCGCT
TGAAGAAGATC
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