CF504162
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_METTH (30S ribosomal protein S13P OS=Methanobacterium thermoautotrophicum GN=rps13p PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 7.992e-21 Identity = 42/110 (38.18%), Postives = 73/110 (66.36%), Query Frame = 1 Query: 79 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKK 408 E+F+H++R+ ++DG + + ALTSIKG+G+ L+ + A D+N+R G LS E+++L + NP ++ IP W +NR+ DY+ G ++ + L+M LR+DL R++K Sbjct: 3 EEFKHMVRIARKDIDGNKTMENALTSIKGVGKALSRAIIMSAGYDLNQRIGYLSDEEIERLEEAIKNPAKYNIPSWMINRRNDYETGEDKHLIESDLEMCLREDLNRMRK 112
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_METS3 (30S ribosomal protein S13P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps13p PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 7.992e-21 Identity = 43/110 (39.09%), Postives = 74/110 (67.27%), Query Frame = 1 Query: 79 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKK 408 +DF+H++R+ +VDG + I ALT IKG+G L+ +C+ D+D + G ++ ++ ++ ++ NP++F IP+W LNR++DY+ G ++ + LDM LRDDL R+KK Sbjct: 3 DDFKHLVRISRKDVDGNKTIEQALTEIKGVGISLSTTMCRTLDLDSEAQIGYIADEDVLKIEEILENPQKFNIPNWMLNRREDYETGENIHLIESDLDMTLRDDLNRMKK 112
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS18_ENCCU (40S ribosomal protein S18 OS=Encephalitozoon cuniculi GN=RPS18 PE=1 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 3.037e-20 Identity = 45/109 (41.28%), Postives = 71/109 (65.14%), Query Frame = 1 Query: 82 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKK 408 + Q+I+R+ NTN+DG ++I FALT I+GIG R+A +CK+ +D+ KRAGE+ E+ ++ + +P IP+ ++N Q+D DG S ++ LD LR +ER KK Sbjct: 9 EVQYIVRIHNTNIDGTKRIPFALTKIRGIGIRIATAICKRLGIDLRKRAGEMGEDEMKRISDAILDPASVGIPESYMNHQRDIIDGTTSHLIGTRLDADLRMMIERGKK 117
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_PYRFU (30S ribosomal protein S13P OS=Pyrococcus furiosus GN=rps13p PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 7.480e-19 Identity = 43/110 (39.09%), Postives = 75/110 (68.18%), Query Frame = 1 Query: 82 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411 +F+HI+RV ++DG +++ +ALT+IKGIG A +VC+ A +D +AG L+ ++ ++ ++A+P IP W +NR KDY+ GR +++ LDM +R+D+ RL++I Sbjct: 3 NFRHIVRVAGVDLDGNKQLRWALTAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILADPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRI 112
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_PYRAB (30S ribosomal protein S13P OS=Pyrococcus abyssi GN=rps13p PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 9.770e-19 Identity = 42/110 (38.18%), Postives = 74/110 (67.27%), Query Frame = 1 Query: 82 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411 DF+HI+RV ++DG +++ +ALT+IKG+G A +VC+ A +D +AG L+ ++ ++ ++ +P IP W +NR KDY+ GR +++ LDM +R+D+ RL++I Sbjct: 3 DFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILQDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRI 112
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_PYRHO (30S ribosomal protein S13P OS=Pyrococcus horikoshii GN=rps13p PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 1.666e-18 Identity = 41/110 (37.27%), Postives = 74/110 (67.27%), Query Frame = 1 Query: 82 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411 DF+HI+RV ++DG +++ +ALT+IKG+G A +VC+ A +D +AG L+ ++ ++ ++ +P IP W +NR KDY+ G+ +++ LDM +R+D+ RL++I Sbjct: 3 DFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILQDPVSHGIPRWAVNRPKDYETGKDLHLITAKLDMAIREDIMRLRRI 112
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_METKA (30S ribosomal protein S13P OS=Methanopyrus kandleri GN=rps13p PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 1.666e-18 Identity = 43/116 (37.07%), Postives = 76/116 (65.52%), Query Frame = 1 Query: 70 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQL--MVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411 +A+++ + I+R+ + ++DG +K+ +ALT IKGIG R+A +C++ +D K+ GELS E++++ + + + IP W NRQKDY+ G +V L+M ++ D++RLKKI Sbjct: 1 MADDEVKPIVRIADVDLDGHKKVPYALTGIKGIGIRMAYAICRELGLDEEKKLGELSDEEIERIEEEIKKLSEGESNIPSWMYNRQKDYETGEDMHLVGAELEMTVKQDIDRLKKI 116
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_METJA (30S ribosomal protein S13P OS=Methanocaldococcus jannaschii GN=rps13p PE=3 SV=2) HSP 1 Score: 91.2781 bits (225), Expect = 1.666e-18 Identity = 42/112 (37.50%), Postives = 72/112 (64.29%), Query Frame = 1 Query: 76 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411 N +F++++RV T++DG +K++ AL I G+G +A + + A +D NK AG L+ E+ ++ V+A+P +F IP W NR+KDY G V+ + L + ++D+ RLK+I Sbjct: 3 NSEFKYLIRVSRTDLDGNKKLIMALQDIYGVGEAMARAIVRVAKLDPNKLAGYLTEEEVKKIEEVLADPAKFGIPSWMFNRRKDYVTGEDKHVIESDLMIIKQEDINRLKRI 114
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_HYPBU (30S ribosomal protein S13P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps13p PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 6.333e-18 Identity = 42/115 (36.52%), Postives = 73/115 (63.48%), Query Frame = 1 Query: 67 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411 +++ + +++I+R+L T++ G K+ + L +KGIG LA +C+ +D NKR G L+ AE++++ +ANP IP W LNR+KDY+ G+ +V L ++ D+ER K+I Sbjct: 1 MLSEQQYRYIVRILGTDIPGDLKVPYGLALVKGIGVNLAYALCRLLGIDPNKRIGFLTDAEIEKIEKAMANPLAIGIPVWMLNRRKDYETGKDLHLVGADLIYYVKRDIEREKRI 115
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_PICTO (30S ribosomal protein S13P OS=Picrophilus torridus GN=rps13p PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 1.411e-17 Identity = 40/112 (35.71%), Postives = 71/112 (63.39%), Query Frame = 1 Query: 76 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411 NE+FQ+I+R+ N +++G++ + AL +KGIG RL+ + KK D+D ++R GEL ++++L + IP W N ++D G+ +VSN LD+++ DD+ +KK+ Sbjct: 8 NENFQYIVRIANKDLNGERPLKLALADLKGIGLRLSETIAKKLDLDPDQRIGELGEDKIEELRKYIEGKVYDGIPYWMYNHRRDITTGKDFNLVSNDLDLQINDDINLMKKM 119 The following BLAST results are available for this feature:
BLAST of CF504162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 57
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF504162 ID=CF504162; Name=CF504162; organism=Citrus sinensis; type=EST; length=411bpback to top |