CF504162

Overview
NameCF504162
Unique NameCF504162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length411
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_METTH (30S ribosomal protein S13P OS=Methanobacterium thermoautotrophicum GN=rps13p PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.992e-21
Identity = 42/110 (38.18%), Postives = 73/110 (66.36%), Query Frame = 1
Query:   79 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKK 408
            E+F+H++R+   ++DG + +  ALTSIKG+G+ L+  +   A  D+N+R G LS  E+++L   + NP ++ IP W +NR+ DY+ G    ++ + L+M LR+DL R++K
Sbjct:    3 EEFKHMVRIARKDIDGNKTMENALTSIKGVGKALSRAIIMSAGYDLNQRIGYLSDEEIERLEEAIKNPAKYNIPSWMINRRNDYETGEDKHLIESDLEMCLREDLNRMRK 112          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_METS3 (30S ribosomal protein S13P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps13p PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.992e-21
Identity = 43/110 (39.09%), Postives = 74/110 (67.27%), Query Frame = 1
Query:   79 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKK 408
            +DF+H++R+   +VDG + I  ALT IKG+G  L+  +C+  D+D   + G ++  ++ ++  ++ NP++F IP+W LNR++DY+ G    ++ + LDM LRDDL R+KK
Sbjct:    3 DDFKHLVRISRKDVDGNKTIEQALTEIKGVGISLSTTMCRTLDLDSEAQIGYIADEDVLKIEEILENPQKFNIPNWMLNRREDYETGENIHLIESDLDMTLRDDLNRMKK 112          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS18_ENCCU (40S ribosomal protein S18 OS=Encephalitozoon cuniculi GN=RPS18 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.037e-20
Identity = 45/109 (41.28%), Postives = 71/109 (65.14%), Query Frame = 1
Query:   82 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKK 408
            + Q+I+R+ NTN+DG ++I FALT I+GIG R+A  +CK+  +D+ KRAGE+   E+ ++   + +P    IP+ ++N Q+D  DG  S ++   LD  LR  +ER KK
Sbjct:    9 EVQYIVRIHNTNIDGTKRIPFALTKIRGIGIRIATAICKRLGIDLRKRAGEMGEDEMKRISDAILDPASVGIPESYMNHQRDIIDGTTSHLIGTRLDADLRMMIERGKK 117          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_PYRFU (30S ribosomal protein S13P OS=Pyrococcus furiosus GN=rps13p PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.480e-19
Identity = 43/110 (39.09%), Postives = 75/110 (68.18%), Query Frame = 1
Query:   82 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411
            +F+HI+RV   ++DG +++ +ALT+IKGIG   A +VC+ A +D   +AG L+  ++ ++  ++A+P    IP W +NR KDY+ GR   +++  LDM +R+D+ RL++I
Sbjct:    3 NFRHIVRVAGVDLDGNKQLRWALTAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILADPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRI 112          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_PYRAB (30S ribosomal protein S13P OS=Pyrococcus abyssi GN=rps13p PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.770e-19
Identity = 42/110 (38.18%), Postives = 74/110 (67.27%), Query Frame = 1
Query:   82 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411
            DF+HI+RV   ++DG +++ +ALT+IKG+G   A +VC+ A +D   +AG L+  ++ ++  ++ +P    IP W +NR KDY+ GR   +++  LDM +R+D+ RL++I
Sbjct:    3 DFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILQDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRI 112          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_PYRHO (30S ribosomal protein S13P OS=Pyrococcus horikoshii GN=rps13p PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.666e-18
Identity = 41/110 (37.27%), Postives = 74/110 (67.27%), Query Frame = 1
Query:   82 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411
            DF+HI+RV   ++DG +++ +ALT+IKG+G   A +VC+ A +D   +AG L+  ++ ++  ++ +P    IP W +NR KDY+ G+   +++  LDM +R+D+ RL++I
Sbjct:    3 DFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILQDPVSHGIPRWAVNRPKDYETGKDLHLITAKLDMAIREDIMRLRRI 112          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_METKA (30S ribosomal protein S13P OS=Methanopyrus kandleri GN=rps13p PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.666e-18
Identity = 43/116 (37.07%), Postives = 76/116 (65.52%), Query Frame = 1
Query:   70 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQL--MVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411
            +A+++ + I+R+ + ++DG +K+ +ALT IKGIG R+A  +C++  +D  K+ GELS  E++++   +   +  +  IP W  NRQKDY+ G    +V   L+M ++ D++RLKKI
Sbjct:    1 MADDEVKPIVRIADVDLDGHKKVPYALTGIKGIGIRMAYAICRELGLDEEKKLGELSDEEIERIEEEIKKLSEGESNIPSWMYNRQKDYETGEDMHLVGAELEMTVKQDIDRLKKI 116          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_METJA (30S ribosomal protein S13P OS=Methanocaldococcus jannaschii GN=rps13p PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.666e-18
Identity = 42/112 (37.50%), Postives = 72/112 (64.29%), Query Frame = 1
Query:   76 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411
            N +F++++RV  T++DG +K++ AL  I G+G  +A  + + A +D NK AG L+  E+ ++  V+A+P +F IP W  NR+KDY  G    V+ + L +  ++D+ RLK+I
Sbjct:    3 NSEFKYLIRVSRTDLDGNKKLIMALQDIYGVGEAMARAIVRVAKLDPNKLAGYLTEEEVKKIEEVLADPAKFGIPSWMFNRRKDYVTGEDKHVIESDLMIIKQEDINRLKRI 114          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_HYPBU (30S ribosomal protein S13P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps13p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.333e-18
Identity = 42/115 (36.52%), Postives = 73/115 (63.48%), Query Frame = 1
Query:   67 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411
            +++ + +++I+R+L T++ G  K+ + L  +KGIG  LA  +C+   +D NKR G L+ AE++++   +ANP    IP W LNR+KDY+ G+   +V   L   ++ D+ER K+I
Sbjct:    1 MLSEQQYRYIVRILGTDIPGDLKVPYGLALVKGIGVNLAYALCRLLGIDPNKRIGFLTDAEIEKIEKAMANPLAIGIPVWMLNRRKDYETGKDLHLVGADLIYYVKRDIEREKRI 115          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_PICTO (30S ribosomal protein S13P OS=Picrophilus torridus GN=rps13p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.411e-17
Identity = 40/112 (35.71%), Postives = 71/112 (63.39%), Query Frame = 1
Query:   76 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411
            NE+FQ+I+R+ N +++G++ +  AL  +KGIG RL+  + KK D+D ++R GEL   ++++L   +       IP W  N ++D   G+   +VSN LD+++ DD+  +KK+
Sbjct:    8 NENFQYIVRIANKDLNGERPLKLALADLKGIGLRLSETIAKKLDLDPDQRIGELGEDKIEELRKYIEGKVYDGIPYWMYNHRRDITTGKDFNLVSNDLDLQINDDINLMKKM 119          
The following BLAST results are available for this feature:
BLAST of CF504162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
RS13_METTH7.992e-2138.1830S ribosomal protein S13P OS=Methanobacterium the... [more]
RS13_METS37.992e-2139.0930S ribosomal protein S13P OS=Methanobrevibacter s... [more]
RS18_ENCCU3.037e-2041.2840S ribosomal protein S18 OS=Encephalitozoon cunic... [more]
RS13_PYRFU7.480e-1939.0930S ribosomal protein S13P OS=Pyrococcus furiosus ... [more]
RS13_PYRAB9.770e-1938.1830S ribosomal protein S13P OS=Pyrococcus abyssi GN... [more]
RS13_PYRHO1.666e-1837.2730S ribosomal protein S13P OS=Pyrococcus horikoshi... [more]
RS13_METKA1.666e-1837.0730S ribosomal protein S13P OS=Methanopyrus kandler... [more]
RS13_METJA1.666e-1837.5030S ribosomal protein S13P OS=Methanocaldococcus j... [more]
RS13_HYPBU6.333e-1836.5230S ribosomal protein S13P OS=Hyperthermus butylic... [more]
RS13_PICTO1.411e-1735.7130S ribosomal protein S13P OS=Picrophilus torridus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-650 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504162 ID=CF504162; Name=CF504162; organism=Citrus sinensis; type=EST; length=411bp
AGAAGGCGAAGGCACAAAAGTCAACCATAAAGGAAAAAAGAGAAACGAAC
ATCTCCAGCCATGTCTCTGGTAGCCAACGAGGATTTTCAACACATTCTTC
GTGTTCTGAACACGAATGTTGATGGGAAACAAAAGATCATGTTTGCTCTC
ACATCCATTAAGGGTATCGGTCGCCGTTTGGCCAATATTGTCTGCAAGAA
AGCTGATGTCGACATGAACAAAAGAGCTGGTGAGCTCTCTGCCGCTGAGC
TTGACCAACTGATGGTGGTTGTGGCAAATCCACGCCAGTTTAAGATCCCA
GACTGGTTTCTTAACAGGCAAAAGGATTACAAGGATGGGAGGTACTCCCA
GGTCGTGTCTAATGCATTGGACATGAAGCTTAGGGATGATCTTGAGCGCT
TGAAGAAGATC
back to top