CF504162
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_UNCMA (30S ribosomal protein S13P OS=Uncultured methanogenic archaeon RC-I GN=rps13p PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 1.842e-17 Identity = 45/127 (35.43%), Postives = 74/127 (58.27%), Query Frame = 1 Query: 31 RKKEKRTSPAMSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411 RK K PA ++ ++I+R+ NT++DG Q + FALT IKGIG R++ I+ ++A VD + G L ++D+L V+ N + +P W LNR++D G + L M +++D+ +KKI Sbjct: 51 RKGGKGKKPAAEEKPKDEIKYIVRIANTDLDGTQTVEFALTGIKGIGNRISKIIARQAQVDPHATMGYLPPEQVDKLRAVIDN-LEANVPVWMLNRRRDIYTGEDKHLYGVDLTMAVKEDINIMKKI 176
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_THEVO (30S ribosomal protein S13P OS=Thermoplasma volcanium GN=rps13p PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 3.143e-17 Identity = 40/127 (31.50%), Postives = 80/127 (62.99%), Query Frame = 1 Query: 31 RKKEKRTSPAMSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411 + ++ PA N+DFQ+I+R+ N +++G++ I AL+ +KGIG RL + ++ ++ K+ GEL E+++L V N +++ +PDW LN +++ G+ +V+ LD+++++D+ +KKI Sbjct: 10 KSDKEAAKPAAKKDENKDFQYIVRIANKDLNGERPIPLALSDLKGIGLRLGYAIAERLNLQPTKKIGELKEDEIEKLKEYVEN-KEYDLPDWLLNHRREPVTGKNLNLVTTDLDVQVQEDINLMKKI 135
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_STAMF (30S ribosomal protein S13P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps13p PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 5.361e-17 Identity = 38/110 (34.55%), Postives = 68/110 (61.82%), Query Frame = 1 Query: 82 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411 ++++I+R+ T++DG K ++ L IKG+G LA +C++ +D R G L+ E+ ++ +++NP + IP W LNR+KDY G+ ++ L ++ D+ER KKI Sbjct: 6 NYRYIVRIAGTDIDGSLKTVYGLAEIKGVGVNLAYGICRRLGIDPEMRIGYLTDEEIKRIEDLLSNPSAYDIPSWMLNRRKDYVTGKDMHLIGAELIFYVKQDIEREKKI 115
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_PYRKO (30S ribosomal protein S13P OS=Pyrococcus kodakaraensis GN=rps13p PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 5.361e-17 Identity = 41/111 (36.94%), Postives = 72/111 (64.86%), Query Frame = 1 Query: 79 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411 E+F+HI+RV ++DG +++ +ALT IKGIG A +V + A +D +AG L+ ++ ++ ++A+P IP W +NR KDY+ G+ +++ L M R+D+ RL++I Sbjct: 3 ENFRHIVRVAGVDIDGHKQVRWALTGIKGIGINFATMVLRVAGIDPFMKAGYLTDEQVKKIEEILADPVAHGIPAWAVNRPKDYETGKDMHLITAKLVMAWREDVNRLRRI 113
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_THEAC (30S ribosomal protein S13P OS=Thermoplasma acidophilum GN=rps13p PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 9.144e-17 Identity = 41/132 (31.06%), Postives = 84/132 (63.64%), Query Frame = 1 Query: 16 KSQP*RKKEKRTSPAMSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411 KSQP +K+ N+DFQ+I+R+ N +++G++ + AL+ +KGIG RL ++ ++ D+ ++K+ GEL +L++L V +++ +P+W LN +++ G+ +VS L++++++D+ +KKI Sbjct: 17 KSQPEKKE------------NKDFQYIVRIANKDLNGERLLPLALSDLKGIGERLGYVIAERLDLPIDKKIGELKEEQLEKLREYV-EAKEYDLPEWLLNHRREPVTGKNLNLVSTDLEIQVQEDINLMKKI 135
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_NATPD (30S ribosomal protein S13P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps13p PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 1.560e-16 Identity = 41/112 (36.61%), Postives = 66/112 (58.93%), Query Frame = 1 Query: 76 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411 +ED Q+ +R+ T++DG + + ALT + GIGRR+A I+ +KA+VD G L ++D ++ V ++P+W N QKD+ G + + N L M R D+ R+KKI Sbjct: 12 DEDLQYFVRIGQTDLDGTKSVERALTDMNGIGRRVARIIAEKAEVDRRDVLGALDEEKIDDVVAAVEEYGD-EVPEWLTNHQKDFFTGETTHEIGNDLQMSRRQDINRMKKI 122
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_SULSO (30S ribosomal protein S13P OS=Sulfolobus solfataricus GN=rps13p PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 2.661e-16 Identity = 40/111 (36.04%), Postives = 69/111 (62.16%), Query Frame = 1 Query: 76 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKK 408 ++ F++++R+ +VDG K+ +AL +KGIG A + +K +D N R GELS AE+ ++ V+++ +P W NR+KDY+ G +V++ L +R+D+ER KK Sbjct: 2 SQQFKYVVRIFGQDVDGTMKLPYALAMVKGIGYNTAKAIIRKLGMDPNARLGELSDAEVKKVESVISDHTIKGLPSWLYNRRKDYESGLDLHLVTSDLIFYVRNDIEREKK 112
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_METTP (30S ribosomal protein S13P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps13p PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 5.927e-16 Identity = 43/109 (39.45%), Postives = 67/109 (61.47%), Query Frame = 1 Query: 82 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKK 408 + +HI+R+ NT++DGK+++ ALT IKG+GRRLA + KA VD G+L +++ L V+ + R IP W +NR+KD G V+ + LR+DL+ +KK Sbjct: 11 ELRHIVRIYNTDLDGKKQVQMALTGIKGVGRRLARVFAVKAGVDPCATLGKLPEEQIEALKNVIESVRD-NIPAWMMNRRKDIITGVDKHVMGAEVLTTLREDLDIMKK 118
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_SULTO (30S ribosomal protein S13P OS=Sulfolobus tokodaii GN=rps13p PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 1.320e-15 Identity = 38/111 (34.23%), Postives = 69/111 (62.16%), Query Frame = 1 Query: 79 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411 + F++I+R+ +VDG K+ +AL +KGIG A + K +D ++R GELS ++ ++ + + + ++P+W NR+KDY+ G +V++ L +R+D+ER KKI Sbjct: 5 QQFKYIVRLFGQDVDGTMKVPYALAMVKGIGYNTARAIVFKLGLDKDRRLGELSDEDIKKIENYLTDKKILEVPNWMYNRRKDYESGIDMHLVTSDLIFYVRNDIEREKKI 115
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_SULAC (30S ribosomal protein S13P OS=Sulfolobus acidocaldarius GN=rps13p PE=3 SV=2) HSP 1 Score: 81.6481 bits (200), Expect = 1.320e-15 Identity = 39/113 (34.51%), Postives = 72/113 (63.72%), Query Frame = 1 Query: 70 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKK 408 ++ + F++I+R+ +VDG K+ +AL IKGIG A I+ +K ++D +KR GE+S ++ ++ ++ N + P+W NRQKDY+ G +V++ L +R+D+ER ++ Sbjct: 1 MSQQQFKYIVRLFGQDVDGTMKLPYALAMIKGIGYNTAMIIIRKLNLDKDKRLGEISDEDIKKIENLLNNKIIPESPNWIYNRQKDYESGADMHLVTSDLIFYVRNDIERERR 113 The following BLAST results are available for this feature:
BLAST of CF504162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 57
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504162 ID=CF504162; Name=CF504162; organism=Citrus sinensis; type=EST; length=411bpback to top |