CF504162

Overview
NameCF504162
Unique NameCF504162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length411
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9584 contig Csv1_Contig9584:74..484. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_UNCMA (30S ribosomal protein S13P OS=Uncultured methanogenic archaeon RC-I GN=rps13p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.842e-17
Identity = 45/127 (35.43%), Postives = 74/127 (58.27%), Query Frame = 1
Query:   31 RKKEKRTSPAMSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411
            RK  K   PA      ++ ++I+R+ NT++DG Q + FALT IKGIG R++ I+ ++A VD +   G L   ++D+L  V+ N  +  +P W LNR++D   G    +    L M +++D+  +KKI
Sbjct:   51 RKGGKGKKPAAEEKPKDEIKYIVRIANTDLDGTQTVEFALTGIKGIGNRISKIIARQAQVDPHATMGYLPPEQVDKLRAVIDN-LEANVPVWMLNRRRDIYTGEDKHLYGVDLTMAVKEDINIMKKI 176          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_THEVO (30S ribosomal protein S13P OS=Thermoplasma volcanium GN=rps13p PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.143e-17
Identity = 40/127 (31.50%), Postives = 80/127 (62.99%), Query Frame = 1
Query:   31 RKKEKRTSPAMSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411
            +  ++   PA     N+DFQ+I+R+ N +++G++ I  AL+ +KGIG RL   + ++ ++   K+ GEL   E+++L   V N +++ +PDW LN +++   G+   +V+  LD+++++D+  +KKI
Sbjct:   10 KSDKEAAKPAAKKDENKDFQYIVRIANKDLNGERPIPLALSDLKGIGLRLGYAIAERLNLQPTKKIGELKEDEIEKLKEYVEN-KEYDLPDWLLNHRREPVTGKNLNLVTTDLDVQVQEDINLMKKI 135          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_STAMF (30S ribosomal protein S13P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps13p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.361e-17
Identity = 38/110 (34.55%), Postives = 68/110 (61.82%), Query Frame = 1
Query:   82 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411
            ++++I+R+  T++DG  K ++ L  IKG+G  LA  +C++  +D   R G L+  E+ ++  +++NP  + IP W LNR+KDY  G+   ++   L   ++ D+ER KKI
Sbjct:    6 NYRYIVRIAGTDIDGSLKTVYGLAEIKGVGVNLAYGICRRLGIDPEMRIGYLTDEEIKRIEDLLSNPSAYDIPSWMLNRRKDYVTGKDMHLIGAELIFYVKQDIEREKKI 115          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_PYRKO (30S ribosomal protein S13P OS=Pyrococcus kodakaraensis GN=rps13p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.361e-17
Identity = 41/111 (36.94%), Postives = 72/111 (64.86%), Query Frame = 1
Query:   79 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411
            E+F+HI+RV   ++DG +++ +ALT IKGIG   A +V + A +D   +AG L+  ++ ++  ++A+P    IP W +NR KDY+ G+   +++  L M  R+D+ RL++I
Sbjct:    3 ENFRHIVRVAGVDIDGHKQVRWALTGIKGIGINFATMVLRVAGIDPFMKAGYLTDEQVKKIEEILADPVAHGIPAWAVNRPKDYETGKDMHLITAKLVMAWREDVNRLRRI 113          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_THEAC (30S ribosomal protein S13P OS=Thermoplasma acidophilum GN=rps13p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.144e-17
Identity = 41/132 (31.06%), Postives = 84/132 (63.64%), Query Frame = 1
Query:   16 KSQP*RKKEKRTSPAMSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411
            KSQP +K+            N+DFQ+I+R+ N +++G++ +  AL+ +KGIG RL  ++ ++ D+ ++K+ GEL   +L++L   V   +++ +P+W LN +++   G+   +VS  L++++++D+  +KKI
Sbjct:   17 KSQPEKKE------------NKDFQYIVRIANKDLNGERLLPLALSDLKGIGERLGYVIAERLDLPIDKKIGELKEEQLEKLREYV-EAKEYDLPEWLLNHRREPVTGKNLNLVSTDLEIQVQEDINLMKKI 135          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_NATPD (30S ribosomal protein S13P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps13p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.560e-16
Identity = 41/112 (36.61%), Postives = 66/112 (58.93%), Query Frame = 1
Query:   76 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411
            +ED Q+ +R+  T++DG + +  ALT + GIGRR+A I+ +KA+VD     G L   ++D ++  V      ++P+W  N QKD+  G  +  + N L M  R D+ R+KKI
Sbjct:   12 DEDLQYFVRIGQTDLDGTKSVERALTDMNGIGRRVARIIAEKAEVDRRDVLGALDEEKIDDVVAAVEEYGD-EVPEWLTNHQKDFFTGETTHEIGNDLQMSRRQDINRMKKI 122          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_SULSO (30S ribosomal protein S13P OS=Sulfolobus solfataricus GN=rps13p PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.661e-16
Identity = 40/111 (36.04%), Postives = 69/111 (62.16%), Query Frame = 1
Query:   76 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKK 408
            ++ F++++R+   +VDG  K+ +AL  +KGIG   A  + +K  +D N R GELS AE+ ++  V+++     +P W  NR+KDY+ G    +V++ L   +R+D+ER KK
Sbjct:    2 SQQFKYVVRIFGQDVDGTMKLPYALAMVKGIGYNTAKAIIRKLGMDPNARLGELSDAEVKKVESVISDHTIKGLPSWLYNRRKDYESGLDLHLVTSDLIFYVRNDIEREKK 112          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_METTP (30S ribosomal protein S13P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps13p PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.927e-16
Identity = 43/109 (39.45%), Postives = 67/109 (61.47%), Query Frame = 1
Query:   82 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKK 408
            + +HI+R+ NT++DGK+++  ALT IKG+GRRLA +   KA VD     G+L   +++ L  V+ + R   IP W +NR+KD   G    V+   +   LR+DL+ +KK
Sbjct:   11 ELRHIVRIYNTDLDGKKQVQMALTGIKGVGRRLARVFAVKAGVDPCATLGKLPEEQIEALKNVIESVRD-NIPAWMMNRRKDIITGVDKHVMGAEVLTTLREDLDIMKK 118          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_SULTO (30S ribosomal protein S13P OS=Sulfolobus tokodaii GN=rps13p PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.320e-15
Identity = 38/111 (34.23%), Postives = 69/111 (62.16%), Query Frame = 1
Query:   79 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411
            + F++I+R+   +VDG  K+ +AL  +KGIG   A  +  K  +D ++R GELS  ++ ++   + + +  ++P+W  NR+KDY+ G    +V++ L   +R+D+ER KKI
Sbjct:    5 QQFKYIVRLFGQDVDGTMKVPYALAMVKGIGYNTARAIVFKLGLDKDRRLGELSDEDIKKIENYLTDKKILEVPNWMYNRRKDYESGIDMHLVTSDLIFYVRNDIEREKKI 115          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_SULAC (30S ribosomal protein S13P OS=Sulfolobus acidocaldarius GN=rps13p PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.320e-15
Identity = 39/113 (34.51%), Postives = 72/113 (63.72%), Query Frame = 1
Query:   70 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKK 408
            ++ + F++I+R+   +VDG  K+ +AL  IKGIG   A I+ +K ++D +KR GE+S  ++ ++  ++ N    + P+W  NRQKDY+ G    +V++ L   +R+D+ER ++
Sbjct:    1 MSQQQFKYIVRLFGQDVDGTMKLPYALAMIKGIGYNTAMIIIRKLNLDKDKRLGEISDEDIKKIENLLNNKIIPESPNWIYNRQKDYESGADMHLVTSDLIFYVRNDIERERR 113          
The following BLAST results are available for this feature:
BLAST of CF504162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
RS13_UNCMA1.842e-1735.4330S ribosomal protein S13P OS=Uncultured methanoge... [more]
RS13_THEVO3.143e-1731.5030S ribosomal protein S13P OS=Thermoplasma volcani... [more]
RS13_STAMF5.361e-1734.5530S ribosomal protein S13P OS=Staphylothermus mari... [more]
RS13_PYRKO5.361e-1736.9430S ribosomal protein S13P OS=Pyrococcus kodakarae... [more]
RS13_THEAC9.144e-1731.0630S ribosomal protein S13P OS=Thermoplasma acidoph... [more]
RS13_NATPD1.560e-1636.6130S ribosomal protein S13P OS=Natronomonas pharaon... [more]
RS13_SULSO2.661e-1636.0430S ribosomal protein S13P OS=Sulfolobus solfatari... [more]
RS13_METTP5.927e-1639.4530S ribosomal protein S13P OS=Methanosaeta thermop... [more]
RS13_SULTO1.320e-1534.2330S ribosomal protein S13P OS=Sulfolobus tokodaii ... [more]
RS13_SULAC1.320e-1534.5130S ribosomal protein S13P OS=Sulfolobus acidocald... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-650 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504162 ID=CF504162; Name=CF504162; organism=Citrus sinensis; type=EST; length=411bp
AGAAGGCGAAGGCACAAAAGTCAACCATAAAGGAAAAAAGAGAAACGAAC
ATCTCCAGCCATGTCTCTGGTAGCCAACGAGGATTTTCAACACATTCTTC
GTGTTCTGAACACGAATGTTGATGGGAAACAAAAGATCATGTTTGCTCTC
ACATCCATTAAGGGTATCGGTCGCCGTTTGGCCAATATTGTCTGCAAGAA
AGCTGATGTCGACATGAACAAAAGAGCTGGTGAGCTCTCTGCCGCTGAGC
TTGACCAACTGATGGTGGTTGTGGCAAATCCACGCCAGTTTAAGATCCCA
GACTGGTTTCTTAACAGGCAAAAGGATTACAAGGATGGGAGGTACTCCCA
GGTCGTGTCTAATGCATTGGACATGAAGCTTAGGGATGATCTTGAGCGCT
TGAAGAAGATC
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