CF504162
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_METAC (30S ribosomal protein S13P OS=Methanosarcina acetivorans GN=rps13p PE=3 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 2.252e-15 Identity = 37/112 (33.04%), Postives = 65/112 (58.04%), Query Frame = 1 Query: 76 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411 NE+ +H++R++NT++ G + + +ALT + G+GRR A ++ K A VD + G L E+ +L + +P W LNRQKD G+ ++ + + R+D+ LKK+ Sbjct: 17 NEELRHLVRIMNTDLQGAKPVQYALTGLPGVGRRTAKLIAKGAGVDPSAILGYLPEEEVAKLDTAIGKFEDI-VPSWMLNRQKDLATGQDKHLLGTDILLTFREDINNLKKV 127
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_METMA (30S ribosomal protein S13P OS=Methanosarcina mazei GN=rps13p PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 5.018e-15 Identity = 38/112 (33.93%), Postives = 65/112 (58.04%), Query Frame = 1 Query: 76 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411 NE+ +H++R++NT++ G + + +ALT + GIGRR A ++ K A VD G L E+ +L + + +P W LNRQKD G+ ++ + + R+D+ LKK+ Sbjct: 17 NEELRHLVRIMNTDLKGAKPVEYALTGLPGIGRRTAILIAKGAGVDPTATLGYLPDEEVAKLDAAIGKFEEI-VPSWMLNRQKDLTTGQDKHLLGTDILLTFREDINNLKKV 127
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_METBF (30S ribosomal protein S13P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps13p PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 6.553e-15 Identity = 39/112 (34.82%), Postives = 65/112 (58.04%), Query Frame = 1 Query: 76 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411 NE+ +H++R++NT++ G + + +ALT + GIGRR A ++ K A VD G L E+ +L + N +P W LNRQKD G+ ++ + + R+D+ LKK+ Sbjct: 17 NEEIRHLVRIMNTDLKGAKPVEYALTGLPGIGRRTAILIAKGAGVDPTATLGYLPDEEVAKLDRAIGNFEGI-VPSWMLNRQKDLATGQDKHLLGTDILLTFREDINNLKKV 127
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_ARCFU (30S ribosomal protein S13P OS=Archaeoglobus fulgidus GN=rps13p PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 5.548e-14 Identity = 40/109 (36.70%), Postives = 64/109 (58.72%), Query Frame = 1 Query: 85 FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411 F+HI+R+ +T++DG + +MFALT IKGIG R A + + VD + GEL ++++ V + +P W LNR+KD G+ ++S +D D+ERL K+ Sbjct: 3 FKHIVRIADTDLDGNKSLMFALTGIKGIGLRAARCIVNELGVDGRAKLGELDDETIEKVKKFVEEEIE-SLPSWLLNRRKDPYSGQDLHLLSKDVDFARMLDIERLIKM 110
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_METHJ (30S ribosomal protein S13P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps13p PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 9.463e-14 Identity = 39/112 (34.82%), Postives = 65/112 (58.04%), Query Frame = 1 Query: 76 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411 +++ + +RV NT++DG + ++ +LT IKG+GR A + + A V+ N G+L A +D++ VV+N +IP W NR KD G ++ + M + DD+ LKKI Sbjct: 5 DQEINYFVRVHNTDLDGTKPVLISLTGIKGVGRHTAKFIAETAGVEKNVLMGKLDEASVDRIREVVSNYAD-RIPVWMSNRPKDVYTGVKRHLLGADVTMTVDDDINLLKKI 115
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_HALMA (30S ribosomal protein S13P OS=Haloarcula marismortui GN=rps13p PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 9.463e-14 Identity = 39/111 (35.14%), Postives = 62/111 (55.86%), Query Frame = 1 Query: 79 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411 ED ++ +R+ T++DG + + ALT + GIG R A I+ +KADVD G+L +++++ V N +P+W N QKDY G + N L + R D+ R+K I Sbjct: 18 EDIRYFVRIGQTDLDGTKSVERALTELNGIGHRAARIIAQKADVDRRAVFGKLDDDVIERVVERVENFAD-DVPEWMTNHQKDYFTGETTHETGNDLQLTRRQDINRMKMI 127
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_METMP (30S ribosomal protein S13P OS=Methanococcus maripaludis GN=rps13p PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.236e-13 Identity = 34/110 (30.91%), Postives = 66/110 (60.00%), Query Frame = 1 Query: 82 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411 +F+H +R+ T+++GK + +AL +KGIGR +A V + ++D ++AG L+ ++ ++ V+ +P IP W NR+KD G ++ L + +++D+ +KKI Sbjct: 5 EFKHRIRISKTDLEGKNPLEYALQDMKGIGRAMARAVIRVTELDPKQQAGYLADEDVLKIESVLEDPATHGIPSWMFNRKKDVYSGLDKHLIETDLVLTVQEDITNMKKI 114
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_METBU (30S ribosomal protein S13P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps13p PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.236e-13 Identity = 36/113 (31.86%), Postives = 68/113 (60.18%), Query Frame = 1 Query: 70 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKK 408 +A+E+ +H++R++NT++ GK+ + +ALT I+GIG R + ++ +D N G LS ++ +L + + + ++P W LNRQ D G ++ + + L++DL LKK Sbjct: 1 MADEEIRHLVRIMNTDLQGKKPVKYALTGIRGIGLRTSRVIVDSTGIDPNAVIGYLSDEDIKKLDSTI-DKFEEQLPKWMLNRQFDPLTGENKHLLGQDIILTLKEDLNDLKK 112
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_AERPE (30S ribosomal protein S13P OS=Aeropyrum pernix GN=rps13p PE=3 SV=2) HSP 1 Score: 74.3294 bits (181), Expect = 2.108e-13 Identity = 38/115 (33.04%), Postives = 63/115 (54.78%), Query Frame = 1 Query: 67 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411 + F++I+R+ ++DG K+ + L SIKGIG A V + +D K+ G L+ E+ +L V+ + Q +P W NR+KDY+ G+ ++ + L R D+ER KI Sbjct: 1 MAGETSFKYIVRIAGVDIDGDLKLPYGLASIKGIGYTTAMAVIRMLGLDPEKKVGFLTEEEIRRLDEVLRDITQLGLPKWLYNRRKDYETGKDLHLIGSELIFYARRDIEREMKI 115
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_THEPD (30S ribosomal protein S13P OS=Thermofilum pendens (strain Hrk 5) GN=rps13p PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.331e-12 Identity = 37/110 (33.64%), Postives = 65/110 (59.09%), Query Frame = 1 Query: 82 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411 +F++I+RV ++ G + +++AL IKGIG A V KK +D + G LS E+++L + + +P W LNR+KD G ++++ L + +R+D+E +KKI Sbjct: 4 EFRYIVRVAGVDLPGDKALVYALADIKGIGVSTAQAVAKKLGLDPYRLLGTLSEEEVEKLSAALREIEKLGLPPWMLNRRKDPFLGVDRHLITSDLLITVRNDIEFMKKI 113 The following BLAST results are available for this feature:
BLAST of CF504162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 57
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504162 ID=CF504162; Name=CF504162; organism=Citrus sinensis; type=EST; length=411bpback to top |