CF504162

Overview
NameCF504162
Unique NameCF504162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length411
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_METAC (30S ribosomal protein S13P OS=Methanosarcina acetivorans GN=rps13p PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.252e-15
Identity = 37/112 (33.04%), Postives = 65/112 (58.04%), Query Frame = 1
Query:   76 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411
            NE+ +H++R++NT++ G + + +ALT + G+GRR A ++ K A VD +   G L   E+ +L   +       +P W LNRQKD   G+   ++   + +  R+D+  LKK+
Sbjct:   17 NEELRHLVRIMNTDLQGAKPVQYALTGLPGVGRRTAKLIAKGAGVDPSAILGYLPEEEVAKLDTAIGKFEDI-VPSWMLNRQKDLATGQDKHLLGTDILLTFREDINNLKKV 127          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_METMA (30S ribosomal protein S13P OS=Methanosarcina mazei GN=rps13p PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.018e-15
Identity = 38/112 (33.93%), Postives = 65/112 (58.04%), Query Frame = 1
Query:   76 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411
            NE+ +H++R++NT++ G + + +ALT + GIGRR A ++ K A VD     G L   E+ +L   +    +  +P W LNRQKD   G+   ++   + +  R+D+  LKK+
Sbjct:   17 NEELRHLVRIMNTDLKGAKPVEYALTGLPGIGRRTAILIAKGAGVDPTATLGYLPDEEVAKLDAAIGKFEEI-VPSWMLNRQKDLTTGQDKHLLGTDILLTFREDINNLKKV 127          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_METBF (30S ribosomal protein S13P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps13p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.553e-15
Identity = 39/112 (34.82%), Postives = 65/112 (58.04%), Query Frame = 1
Query:   76 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411
            NE+ +H++R++NT++ G + + +ALT + GIGRR A ++ K A VD     G L   E+ +L   + N     +P W LNRQKD   G+   ++   + +  R+D+  LKK+
Sbjct:   17 NEEIRHLVRIMNTDLKGAKPVEYALTGLPGIGRRTAILIAKGAGVDPTATLGYLPDEEVAKLDRAIGNFEGI-VPSWMLNRQKDLATGQDKHLLGTDILLTFREDINNLKKV 127          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_ARCFU (30S ribosomal protein S13P OS=Archaeoglobus fulgidus GN=rps13p PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.548e-14
Identity = 40/109 (36.70%), Postives = 64/109 (58.72%), Query Frame = 1
Query:   85 FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411
            F+HI+R+ +T++DG + +MFALT IKGIG R A  +  +  VD   + GEL    ++++   V    +  +P W LNR+KD   G+   ++S  +D     D+ERL K+
Sbjct:    3 FKHIVRIADTDLDGNKSLMFALTGIKGIGLRAARCIVNELGVDGRAKLGELDDETIEKVKKFVEEEIE-SLPSWLLNRRKDPYSGQDLHLLSKDVDFARMLDIERLIKM 110          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_METHJ (30S ribosomal protein S13P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps13p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.463e-14
Identity = 39/112 (34.82%), Postives = 65/112 (58.04%), Query Frame = 1
Query:   76 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411
            +++  + +RV NT++DG + ++ +LT IKG+GR  A  + + A V+ N   G+L  A +D++  VV+N    +IP W  NR KD   G    ++   + M + DD+  LKKI
Sbjct:    5 DQEINYFVRVHNTDLDGTKPVLISLTGIKGVGRHTAKFIAETAGVEKNVLMGKLDEASVDRIREVVSNYAD-RIPVWMSNRPKDVYTGVKRHLLGADVTMTVDDDINLLKKI 115          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_HALMA (30S ribosomal protein S13P OS=Haloarcula marismortui GN=rps13p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.463e-14
Identity = 39/111 (35.14%), Postives = 62/111 (55.86%), Query Frame = 1
Query:   79 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411
            ED ++ +R+  T++DG + +  ALT + GIG R A I+ +KADVD     G+L    +++++  V N     +P+W  N QKDY  G  +    N L +  R D+ R+K I
Sbjct:   18 EDIRYFVRIGQTDLDGTKSVERALTELNGIGHRAARIIAQKADVDRRAVFGKLDDDVIERVVERVENFAD-DVPEWMTNHQKDYFTGETTHETGNDLQLTRRQDINRMKMI 127          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_METMP (30S ribosomal protein S13P OS=Methanococcus maripaludis GN=rps13p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.236e-13
Identity = 34/110 (30.91%), Postives = 66/110 (60.00%), Query Frame = 1
Query:   82 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411
            +F+H +R+  T+++GK  + +AL  +KGIGR +A  V +  ++D  ++AG L+  ++ ++  V+ +P    IP W  NR+KD   G    ++   L + +++D+  +KKI
Sbjct:    5 EFKHRIRISKTDLEGKNPLEYALQDMKGIGRAMARAVIRVTELDPKQQAGYLADEDVLKIESVLEDPATHGIPSWMFNRKKDVYSGLDKHLIETDLVLTVQEDITNMKKI 114          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_METBU (30S ribosomal protein S13P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps13p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.236e-13
Identity = 36/113 (31.86%), Postives = 68/113 (60.18%), Query Frame = 1
Query:   70 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKK 408
            +A+E+ +H++R++NT++ GK+ + +ALT I+GIG R + ++     +D N   G LS  ++ +L   + +  + ++P W LNRQ D   G    ++   + + L++DL  LKK
Sbjct:    1 MADEEIRHLVRIMNTDLQGKKPVKYALTGIRGIGLRTSRVIVDSTGIDPNAVIGYLSDEDIKKLDSTI-DKFEEQLPKWMLNRQFDPLTGENKHLLGQDIILTLKEDLNDLKK 112          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_AERPE (30S ribosomal protein S13P OS=Aeropyrum pernix GN=rps13p PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.108e-13
Identity = 38/115 (33.04%), Postives = 63/115 (54.78%), Query Frame = 1
Query:   67 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411
            +     F++I+R+   ++DG  K+ + L SIKGIG   A  V +   +D  K+ G L+  E+ +L  V+ +  Q  +P W  NR+KDY+ G+   ++ + L    R D+ER  KI
Sbjct:    1 MAGETSFKYIVRIAGVDIDGDLKLPYGLASIKGIGYTTAMAVIRMLGLDPEKKVGFLTEEEIRRLDEVLRDITQLGLPKWLYNRRKDYETGKDLHLIGSELIFYARRDIEREMKI 115          
BLAST of CF504162 vs. ExPASy Swiss-Prot
Match: RS13_THEPD (30S ribosomal protein S13P OS=Thermofilum pendens (strain Hrk 5) GN=rps13p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.331e-12
Identity = 37/110 (33.64%), Postives = 65/110 (59.09%), Query Frame = 1
Query:   82 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKI 411
            +F++I+RV   ++ G + +++AL  IKGIG   A  V KK  +D  +  G LS  E+++L   +    +  +P W LNR+KD   G    ++++ L + +R+D+E +KKI
Sbjct:    4 EFRYIVRVAGVDLPGDKALVYALADIKGIGVSTAQAVAKKLGLDPYRLLGTLSEEEVEKLSAALREIEKLGLPPWMLNRRKDPFLGVDRHLITSDLLITVRNDIEFMKKI 113          
The following BLAST results are available for this feature:
BLAST of CF504162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
RS13_METAC2.252e-1533.0430S ribosomal protein S13P OS=Methanosarcina aceti... [more]
RS13_METMA5.018e-1533.9330S ribosomal protein S13P OS=Methanosarcina mazei... [more]
RS13_METBF6.553e-1534.8230S ribosomal protein S13P OS=Methanosarcina barke... [more]
RS13_ARCFU5.548e-1436.7030S ribosomal protein S13P OS=Archaeoglobus fulgid... [more]
RS13_METHJ9.463e-1434.8230S ribosomal protein S13P OS=Methanospirillum hun... [more]
RS13_HALMA9.463e-1435.1430S ribosomal protein S13P OS=Haloarcula marismort... [more]
RS13_METMP1.236e-1330.9130S ribosomal protein S13P OS=Methanococcus maripa... [more]
RS13_METBU1.236e-1331.8630S ribosomal protein S13P OS=Methanococcoides bur... [more]
RS13_AERPE2.108e-1333.0430S ribosomal protein S13P OS=Aeropyrum pernix GN=... [more]
RS13_THEPD2.331e-1233.6430S ribosomal protein S13P OS=Thermofilum pendens ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-650 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504162 ID=CF504162; Name=CF504162; organism=Citrus sinensis; type=EST; length=411bp
AGAAGGCGAAGGCACAAAAGTCAACCATAAAGGAAAAAAGAGAAACGAAC
ATCTCCAGCCATGTCTCTGGTAGCCAACGAGGATTTTCAACACATTCTTC
GTGTTCTGAACACGAATGTTGATGGGAAACAAAAGATCATGTTTGCTCTC
ACATCCATTAAGGGTATCGGTCGCCGTTTGGCCAATATTGTCTGCAAGAA
AGCTGATGTCGACATGAACAAAAGAGCTGGTGAGCTCTCTGCCGCTGAGC
TTGACCAACTGATGGTGGTTGTGGCAAATCCACGCCAGTTTAAGATCCCA
GACTGGTTTCTTAACAGGCAAAAGGATTACAAGGATGGGAGGTACTCCCA
GGTCGTGTCTAATGCATTGGACATGAAGCTTAGGGATGATCTTGAGCGCT
TGAAGAAGATC
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