CF504166

Overview
NameCF504166
Unique NameCF504166
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A_METVS (Elongation factor 1-alpha OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.118e-15
Identity = 38/74 (51.35%), Postives = 53/74 (71.62%), Query Frame = -3
Query:  245 FSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 466
            F+E+  K++  +G+ LE+ P FLK GDA +VK+IPTKPMV+E+  + P LGRFA+RDM  TVA G+   V  K+
Sbjct:  354 FAEIQKKLNPATGEVLEENPDFLKAGDAAIVKLIPTKPMVIESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A_METVA (Elongation factor 1-alpha OS=Methanococcus vannielii GN=tuf PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.118e-15
Identity = 38/74 (51.35%), Postives = 53/74 (71.62%), Query Frame = -3
Query:  245 FSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 466
            F+E+  K++  +G+ LE+ P FLK GDA +VK+IPTKPMV+E+  + P LGRFA+RDM  TVA G+   V  K+
Sbjct:  354 FAEIQKKLNPATGEVLEENPDFLKAGDAAIVKLIPTKPMVIESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A_METLZ (Elongation factor 1-alpha OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.118e-15
Identity = 39/73 (53.42%), Postives = 52/73 (71.23%), Query Frame = -3
Query:  248 FSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 466
            F+EL  K+D RSG+  E+ P FLK GDA +  + PT+P+V+ET  + P LGRFAVRDM  TVA G++ SV+ K
Sbjct:  350 FTELNKKLDPRSGQVKEENPAFLKAGDAAICTITPTRPLVIETAKELPQLGRFAVRDMGMTVAAGLVLSVKAK 422          
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A_METB6 (Elongation factor 1-alpha OS=Methanoregula boonei (strain 6A8) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.379e-15
Identity = 38/73 (52.05%), Postives = 51/73 (69.86%), Query Frame = -3
Query:  248 FSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 466
            F EL  K+D RSG+  E+ P FLK GDA +V++ PTKPMV+E   + P LGRFAVRDM  T+A G+  +++ K
Sbjct:  350 FIELKKKLDPRSGQTKEENPTFLKTGDAAIVQIKPTKPMVIENVKELPQLGRFAVRDMGSTIAAGMCIAIQPK 422          
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A_IGNH4 (Elongation factor 1-alpha OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.379e-15
Identity = 36/69 (52.17%), Postives = 50/69 (72.46%), Query Frame = -3
Query:  254 ELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 460
            E+  KID R+GK +E+ P FLK GDA +V   P KPMV+E F ++ PLGRFA+RDM +TV +G++  V+
Sbjct:  364 EIKQKIDPRTGKVIEENPSFLKPGDAAVVVFKPLKPMVIEKFQEFQPLGRFAMRDMGKTVGIGIVTDVK 432          
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A_METMJ (Elongation factor 1-alpha OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=tuf PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.025e-15
Identity = 38/73 (52.05%), Postives = 50/73 (68.49%), Query Frame = -3
Query:  248 FSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 466
            F EL+ K+D R+G+  E+ P FLK GDA +VK+ PT+PMV+E   + P LGRFAVRDM  T+A GV   +  K
Sbjct:  350 FVELMKKLDPRTGQVKEENPTFLKTGDAAIVKIRPTQPMVIEKVKEIPQLGRFAVRDMGSTIAAGVCMDITPK 422          
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A_AERPE (Elongation factor 1-alpha OS=Aeropyrum pernix GN=tuf PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.198e-14
Identity = 34/69 (49.28%), Postives = 52/69 (75.36%), Query Frame = -3
Query:  254 ELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 460
            E+  K+D ++G+ +E+ P+FLK GDA +V+  P KP+VVE FS+ P LGRFA+RDM +TV +G++  V+
Sbjct:  360 EIKAKLDPKTGQVVEQNPQFLKAGDAAIVRFKPVKPLVVEKFSEIPQLGRFAMRDMNRTVGIGIVTDVK 428          
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A_THEAC (Elongation factor 1-alpha OS=Thermoplasma acidophilum GN=tuf PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.565e-14
Identity = 36/74 (48.65%), Postives = 52/74 (70.27%), Query Frame = -3
Query:  248 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 469
            +  E+V  ++ + G  L+++P F+KNGD  +VK+IP KP+V+E  S+ P LGRFAVRDM QTVA G    +EK+
Sbjct:  351 RIDEIVKTLNPKDGTTLKEKPDFIKNGDVAIVKVIPDKPLVIEKVSEIPQLGRFAVRDMGQTVAAGQCIDLEKR 424          
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAB (Elongation factor 1-alpha OS=Pyrococcus abyssi GN=tuf PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.044e-14
Identity = 34/74 (45.95%), Postives = 53/74 (71.62%), Query Frame = -3
Query:  251 VKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 472
            V+F +L+ KID R+G   E+ P+F+K GD+ +V + P KP+V+E   + P LGRFA+RDM  T+A G++ S++K
Sbjct:  353 VRFEQLLAKIDPRTGNITEENPQFIKTGDSAIVVLRPMKPVVLEPVKELPQLGRFAIRDMGMTIAAGMVISIQK 426          
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A_METM7 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=tuf PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.044e-14
Identity = 37/74 (50.00%), Postives = 52/74 (70.27%), Query Frame = -3
Query:  245 FSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 466
            F EL  K++  +G+ LE+ P FLK GDA +VK++PTKP+V+E+  + P LGRFA+RDM  TVA G+   V  K+
Sbjct:  354 FMELQKKLNPATGEVLEENPDFLKAGDAAIVKLMPTKPLVIESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
The following BLAST results are available for this feature:
BLAST of CF504166 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
EF1A_METVS4.118e-1551.35Elongation factor 1-alpha OS=Methanococcus vanniel... [more]
EF1A_METVA4.118e-1551.35Elongation factor 1-alpha OS=Methanococcus vanniel... [more]
EF1A_METLZ4.118e-1553.42Elongation factor 1-alpha OS=Methanocorpusculum la... [more]
EF1A_METB65.379e-1552.05Elongation factor 1-alpha OS=Methanoregula boonei ... [more]
EF1A_IGNH45.379e-1552.17Elongation factor 1-alpha OS=Ignicoccus hospitalis... [more]
EF1A_METMJ7.025e-1552.05Elongation factor 1-alpha OS=Methanoculleus marisn... [more]
EF1A_AERPE1.198e-1449.28Elongation factor 1-alpha OS=Aeropyrum pernix GN=t... [more]
EF1A_THEAC1.565e-1448.65Elongation factor 1-alpha OS=Thermoplasma acidophi... [more]
EF1A_PYRAB2.044e-1445.95Elongation factor 1-alpha OS=Pyrococcus abyssi GN=... [more]
EF1A_METM72.044e-1450.00Elongation factor 1-alpha OS=Methanococcus maripal... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-654 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504166 ID=CF504166; Name=CF504166; organism=Citrus sinensis; type=EST; length=474bp
CCAAATTCAGAATATAAAAATCCGAACACCCACCACAGCCAGTTAAGCAG
AAAGATAACATCCCAATTGCTCAACAGCAAACTGGTGGAAGCAAATAGGG
CTGTTTGCAGAAACATTGATGCAAAACAAAAACAGACAAGAAAATAAAAA
AAGACAGAAAATAAACCCTAACTATTGTAGACAGACCCATAAAAATTTCT
CATTTCTTCTTGGCTGCGGACTTGGTGACCTTCGCACCTGTGGGATCCTT
CTTCTCAACACTCTTGATAACACCCACAGCAACAGTCTGACGCATGTCCC
TAACAGCAAAACGACCAAGGGGTGGGTAATCGGAGAAGGTTTCAACAACC
ATGGGCTTGGTGGGAATCATCTTAACCATTCCGGCGTCTCCATTCTTCAA
GAACTTGGGCTCCTTCTCAAGCTCCTTGCCTGATCGCCTATCAATCTTCG
TCACGAGCTCAGAAAACTTGACGG
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