CF504166

Overview
NameCF504166
Unique NameCF504166
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2169 contig Csv1_Contig2169:1170..1643. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A1_MOUSE (Elongation factor 1-alpha 1 OS=Mus musculus GN=Eef1a1 PE=1 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 1.045e-26
Identity = 58/74 (78.38%), Postives = 66/74 (89.19%), Query Frame = -3
Query:  248 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 469
            KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  371 KFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A1_HUMAN (Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.045e-26
Identity = 58/74 (78.38%), Postives = 66/74 (89.19%), Query Frame = -3
Query:  248 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 469
            KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  371 KFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A1_HORSE (Elongation factor 1-alpha 1 OS=Equus caballus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.045e-26
Identity = 58/74 (78.38%), Postives = 66/74 (89.19%), Query Frame = -3
Query:  248 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 469
            KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  371 KFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A1_FELCA (Elongation factor 1-alpha 1 OS=Felis catus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.045e-26
Identity = 58/74 (78.38%), Postives = 66/74 (89.19%), Query Frame = -3
Query:  248 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 469
            KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  371 KFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A1_CRIGR (Elongation factor 1-alpha 1 OS=Cricetulus griseus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.045e-26
Identity = 58/74 (78.38%), Postives = 66/74 (89.19%), Query Frame = -3
Query:  248 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 469
            KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  371 KFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A1_BOVIN (Elongation factor 1-alpha 1 OS=Bos taurus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.045e-26
Identity = 58/74 (78.38%), Postives = 66/74 (89.19%), Query Frame = -3
Query:  248 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 469
            KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  371 KFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A_SCHCO (Elongation factor 1-alpha OS=Schizophyllum commune GN=TEF1 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.365e-26
Identity = 54/78 (69.23%), Postives = 70/78 (89.74%), Query Frame = -3
Query:  236 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 469
            KF+EL+ KIDRR+GK LE  PKF+K+GDA +VK++P+KPM VE++++YPPLGRFAVRDMRQTVAVG+IKSV+K D +G
Sbjct:  369 KFAELLEKIDRRTGKSLEASPKFVKSGDACIVKLVPSKPMCVESYNEYPPLGRFAVRDMRQTVAVGIIKSVDKTDKSG 446          
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A_PODAN (Elongation factor 1-alpha OS=Podospora anserina GN=TEF PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.782e-26
Identity = 55/73 (75.34%), Postives = 66/73 (90.41%), Query Frame = -3
Query:  251 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 469
            KFSEL+ KIDRR+GK +E+ PKF+K+GDA +VKM+P+KPM VE F++YPPLGRFAVRDMRQTVAVGVIK VEK
Sbjct:  370 KFSELLQKIDRRTGKAVEESPKFIKSGDAAIVKMVPSKPMCVEAFTEYPPLGRFAVRDMRQTVAVGVIKKVEK 442          
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A_CAEEL (Elongation factor 1-alpha OS=Caenorhabditis elegans GN=eft-3 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.782e-26
Identity = 56/75 (74.67%), Postives = 68/75 (90.67%), Query Frame = -3
Query:  245 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 469
            KF+EL  K+DRR+GK++E  PKFLK+GDAG+V++IPTKP+ VE+F+DY PLGRFAVRDMRQTVAVGVIKSVEK D
Sbjct:  371 KFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVEKSD 445          
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A_SORMA (Elongation factor 1-alpha OS=Sordaria macrospora GN=TEF PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.040e-26
Identity = 55/73 (75.34%), Postives = 66/73 (90.41%), Query Frame = -3
Query:  251 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 469
            KF+EL+ KIDRR+GK +E  PKF+K+GDA +VKMIP+KPM VE F+DYPPLGRFAVRDMRQTVAVGVIK+V+K
Sbjct:  370 KFAELLEKIDRRTGKAVETSPKFIKSGDAAIVKMIPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKAVDK 442          
The following BLAST results are available for this feature:
BLAST of CF504166 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
EF1A1_MOUSE1.045e-2678.38Elongation factor 1-alpha 1 OS=Mus musculus GN=Eef... [more]
EF1A1_HUMAN1.045e-2678.38Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF... [more]
EF1A1_HORSE1.045e-2678.38Elongation factor 1-alpha 1 OS=Equus caballus GN=E... [more]
EF1A1_FELCA1.045e-2678.38Elongation factor 1-alpha 1 OS=Felis catus GN=EEF1... [more]
EF1A1_CRIGR1.045e-2678.38Elongation factor 1-alpha 1 OS=Cricetulus griseus ... [more]
EF1A1_BOVIN1.045e-2678.38Elongation factor 1-alpha 1 OS=Bos taurus GN=EEF1A... [more]
EF1A_SCHCO1.365e-2669.23Elongation factor 1-alpha OS=Schizophyllum commune... [more]
EF1A_PODAN1.782e-2675.34Elongation factor 1-alpha OS=Podospora anserina GN... [more]
EF1A_CAEEL1.782e-2674.67Elongation factor 1-alpha OS=Caenorhabditis elegan... [more]
EF1A_SORMA3.040e-2675.34Elongation factor 1-alpha OS=Sordaria macrospora G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-654 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504166 ID=CF504166; Name=CF504166; organism=Citrus sinensis; type=EST; length=474bp
CCAAATTCAGAATATAAAAATCCGAACACCCACCACAGCCAGTTAAGCAG
AAAGATAACATCCCAATTGCTCAACAGCAAACTGGTGGAAGCAAATAGGG
CTGTTTGCAGAAACATTGATGCAAAACAAAAACAGACAAGAAAATAAAAA
AAGACAGAAAATAAACCCTAACTATTGTAGACAGACCCATAAAAATTTCT
CATTTCTTCTTGGCTGCGGACTTGGTGACCTTCGCACCTGTGGGATCCTT
CTTCTCAACACTCTTGATAACACCCACAGCAACAGTCTGACGCATGTCCC
TAACAGCAAAACGACCAAGGGGTGGGTAATCGGAGAAGGTTTCAACAACC
ATGGGCTTGGTGGGAATCATCTTAACCATTCCGGCGTCTCCATTCTTCAA
GAACTTGGGCTCCTTCTCAAGCTCCTTGCCTGATCGCCTATCAATCTTCG
TCACGAGCTCAGAAAACTTGACGG
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