CF504166

Overview
NameCF504166
Unique NameCF504166
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2169 contig Csv1_Contig2169:1170..1643. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A_PODCU (Elongation factor 1-alpha OS=Podospora curvicolla GN=TEF PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.040e-26
Identity = 55/73 (75.34%), Postives = 66/73 (90.41%), Query Frame = -3
Query:  251 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 469
            KF+EL+ KIDRR+GK +E+ PKF+K+GDA +VKMIP+KPM VE F++YPPLGRFAVRDMRQTVAVGVIK VEK
Sbjct:  370 KFAELLQKIDRRTGKAVEESPKFIKSGDAAIVKMIPSKPMCVEAFTEYPPLGRFAVRDMRQTVAVGVIKKVEK 442          
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A_NEUCR (Elongation factor 1-alpha OS=Neurospora crassa GN=tef-1 PE=3 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 3.040e-26
Identity = 55/73 (75.34%), Postives = 66/73 (90.41%), Query Frame = -3
Query:  251 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 469
            KF+EL+ KIDRR+GK +E  PKF+K+GDA +VKMIP+KPM VE F+DYPPLGRFAVRDMRQTVAVGVIK+V+K
Sbjct:  370 KFAELLEKIDRRTGKAVEASPKFIKSGDAAIVKMIPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKAVDK 442          
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A_ONCVO (Elongation factor 1-alpha OS=Onchocerca volvulus PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.970e-26
Identity = 54/78 (69.23%), Postives = 68/78 (87.18%), Query Frame = -3
Query:  236 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 469
            KF+EL  K+DRRSGK++E  PK LK+GDAG++ +IPTKP+ VETF++YPPLGRFAVRDMRQTVAVGVIK+V+K +  G
Sbjct:  371 KFAELKEKVDRRSGKKVEDNPKSLKSGDAGIIDLIPTKPLCVETFTEYPPLGRFAVRDMRQTVAVGVIKNVDKSEGVG 448          
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A_DANRE (Elongation factor 1-alpha OS=Danio rerio GN=eef1a PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.970e-26
Identity = 58/74 (78.38%), Postives = 65/74 (87.84%), Query Frame = -3
Query:  248 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 469
            KF+EL  KIDRRSGK+LE  PK LK+GDA +V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGVIKSVEKK
Sbjct:  371 KFAELKEKIDRRSGKKLEDNPKALKSGDAAIVEMVPGKPMCVESFSTYPPLGRFAVRDMRQTVAVGVIKSVEKK 444          
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A2_SCHPO (Elongation factor 1-alpha-B/C OS=Schizosaccharomyces pombe GN=tef1b PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.970e-26
Identity = 55/76 (72.37%), Postives = 67/76 (88.16%), Query Frame = -3
Query:  242 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 469
            KF+EL+ KIDRRSGK++E+ PKF+K+GDA + KM+P+KPM VE F+DY PLGRFAVRDMRQTVAVGVIK+VEK  P
Sbjct:  369 KFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAVEKVAP 444          
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A1_SCHPO (Elongation factor 1-alpha-A OS=Schizosaccharomyces pombe GN=tef1a PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 3.970e-26
Identity = 55/76 (72.37%), Postives = 67/76 (88.16%), Query Frame = -3
Query:  242 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 469
            KF+EL+ KIDRRSGK++E+ PKF+K+GDA + KM+P+KPM VE F+DY PLGRFAVRDMRQTVAVGVIK+VEK  P
Sbjct:  369 KFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAVEKVAP 444          
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A_TRIRE (Elongation factor 1-alpha OS=Trichoderma reesei GN=tef1 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 5.185e-26
Identity = 55/73 (75.34%), Postives = 65/73 (89.04%), Query Frame = -3
Query:  251 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 469
            KF+EL+ KIDRR+GK  E  PKF+K+GD+ +VKMIP+KPM VE F+DYPPLGRFAVRDMRQTVAVGVIK+VEK
Sbjct:  370 KFAELLEKIDRRTGKATESAPKFIKSGDSAIVKMIPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKAVEK 442          
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A_ARTSA (Elongation factor 1-alpha OS=Artemia salina PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 5.185e-26
Identity = 54/77 (70.13%), Postives = 65/77 (84.42%), Query Frame = -3
Query:  239 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPT 469
            KF+E+  K DRR+GK  E EPKF+K+GDA M+ ++P+KP+ VE FSD+PPLGRFAVRDMRQTVAVGVIKSV  KDPT
Sbjct:  371 KFAEIKEKCDRRTGKTTEAEPKFIKSGDAAMITLVPSKPLCVEAFSDFPPLGRFAVRDMRQTVAVGVIKSVNFKDPT 447          
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A_YEAST (Elongation factor 1-alpha OS=Saccharomyces cerevisiae GN=TEF1 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 6.772e-26
Identity = 55/75 (73.33%), Postives = 65/75 (86.67%), Query Frame = -3
Query:  245 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 469
            +F EL+ K DRRSGK+LE  PKFLK+GDA +VK +P+KPM VE FS+YPPLGRFAVRDMRQTVAVGVIKSV+K +
Sbjct:  369 RFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIKSVDKTE 443          
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A2_RAT (Elongation factor 1-alpha 2 OS=Rattus norvegicus GN=Eef1a2 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 6.772e-26
Identity = 57/74 (77.03%), Postives = 65/74 (87.84%), Query Frame = -3
Query:  248 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 469
            KF+EL  KIDRRSGK+LE  PK LK+GDA +V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGVIK+VEKK
Sbjct:  371 KFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444          
The following BLAST results are available for this feature:
BLAST of CF504166 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
EF1A_PODCU3.040e-2675.34Elongation factor 1-alpha OS=Podospora curvicolla ... [more]
EF1A_NEUCR3.040e-2675.34Elongation factor 1-alpha OS=Neurospora crassa GN=... [more]
EF1A_ONCVO3.970e-2669.23Elongation factor 1-alpha OS=Onchocerca volvulus P... [more]
EF1A_DANRE3.970e-2678.38Elongation factor 1-alpha OS=Danio rerio GN=eef1a ... [more]
EF1A2_SCHPO3.970e-2672.37Elongation factor 1-alpha-B/C OS=Schizosaccharomyc... [more]
EF1A1_SCHPO3.970e-2672.37Elongation factor 1-alpha-A OS=Schizosaccharomyces... [more]
EF1A_TRIRE5.185e-2675.34Elongation factor 1-alpha OS=Trichoderma reesei GN... [more]
EF1A_ARTSA5.185e-2670.13Elongation factor 1-alpha OS=Artemia salina PE=1 S... [more]
EF1A_YEAST6.772e-2673.33Elongation factor 1-alpha OS=Saccharomyces cerevis... [more]
EF1A2_RAT6.772e-2677.03Elongation factor 1-alpha 2 OS=Rattus norvegicus G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-654 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504166 ID=CF504166; Name=CF504166; organism=Citrus sinensis; type=EST; length=474bp
CCAAATTCAGAATATAAAAATCCGAACACCCACCACAGCCAGTTAAGCAG
AAAGATAACATCCCAATTGCTCAACAGCAAACTGGTGGAAGCAAATAGGG
CTGTTTGCAGAAACATTGATGCAAAACAAAAACAGACAAGAAAATAAAAA
AAGACAGAAAATAAACCCTAACTATTGTAGACAGACCCATAAAAATTTCT
CATTTCTTCTTGGCTGCGGACTTGGTGACCTTCGCACCTGTGGGATCCTT
CTTCTCAACACTCTTGATAACACCCACAGCAACAGTCTGACGCATGTCCC
TAACAGCAAAACGACCAAGGGGTGGGTAATCGGAGAAGGTTTCAACAACC
ATGGGCTTGGTGGGAATCATCTTAACCATTCCGGCGTCTCCATTCTTCAA
GAACTTGGGCTCCTTCTCAAGCTCCTTGCCTGATCGCCTATCAATCTTCG
TCACGAGCTCAGAAAACTTGACGG
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