CF504166

Overview
NameCF504166
Unique NameCF504166
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2169 contig Csv1_Contig2169:1170..1643. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A_CRYNE (Elongation factor 1-alpha OS=Cryptococcus neoformans GN=TEF1 PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 2.574e-25
Identity = 53/78 (67.95%), Postives = 67/78 (85.90%), Query Frame = -3
Query:  236 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 469
            KF+EL+ KIDRR+GK +E  PKF+K+GDA +VK++  KP+ VET++DYPPLGRFAVRDMRQTVAVGVIKSV+K +  G
Sbjct:  369 KFAELIEKIDRRTGKVMEAAPKFVKSGDAAIVKLVAQKPLCVETYADYPPLGRFAVRDMRQTVAVGVIKSVDKTEKGG 446          
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A4_OSCTI (Elongation factor 1-alpha 4 OS=Oscheius tipulae GN=eft-4 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.390e-25
Identity = 54/75 (72.00%), Postives = 65/75 (86.67%), Query Frame = -3
Query:  245 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 469
            KF+EL  K+DRR+GK++E  PKFLK+GDAG+V++IPTKP+ VE F+DY PLGRFAVRDMRQTVAVGVIK V K D
Sbjct:  371 KFAELKEKVDRRTGKKVEDLPKFLKSGDAGIVELIPTKPLCVEAFTDYAPLGRFAVRDMRQTVAVGVIKGVTKDD 445          
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A_EIMBO (Elongation factor 1-alpha (Fragment) OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 9.779e-25
Identity = 53/78 (67.95%), Postives = 65/78 (83.33%), Query Frame = -3
Query:  236 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 469
            KF+ L  ++DRRSGK LE +PKF+K GDA ++KM P+KPM VE+F +YPPLGRFAVRDM+QTVAVGVIK VEKK+  G
Sbjct:  256 KFAVLEKRLDRRSGKALEDDPKFIKTGDAAIIKMEPSKPMCVESFIEYPPLGRFAVRDMKQTVAVGVIKGVEKKEAGG 333          
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A1_DROME (Elongation factor 1-alpha 1 OS=Drosophila melanogaster GN=Ef1alpha48D PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 2.845e-24
Identity = 50/78 (64.10%), Postives = 65/78 (83.33%), Query Frame = -3
Query:  236 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 469
            KF+E+  K+DRRSGK  E+ PKF+K+GDA +V ++P+KP+ VE F ++PPLGRFAVRDMRQTVAVGVIK+V  KD +G
Sbjct:  371 KFAEIKEKVDRRSGKTTEENPKFIKSGDAAIVNLVPSKPLCVEAFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKDASG 448          
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A_HYDAT (Elongation factor 1-alpha OS=Hydra attenuata PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 6.339e-24
Identity = 52/73 (71.23%), Postives = 63/73 (86.30%), Query Frame = -3
Query:  251 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 469
            KF+EL+ KIDRRSGK +E EPK +K+GDA ++ +IP+K M VE+FS YPPLGRFAVRDMRQTVAVGVIK V+K
Sbjct:  373 KFAELLEKIDRRSGKVIETEPKMVKSGDAAIINLIPSKGMCVESFSQYPPLGRFAVRDMRQTVAVGVIKEVDK 445          
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A_TETPY (Elongation factor 1-alpha OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 8.279e-24
Identity = 51/75 (68.00%), Postives = 61/75 (81.33%), Query Frame = -3
Query:  245 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 469
            KF  +  KIDRR+GK  E+ PKF+KNGDA +V +IPTK + VE F +YPPLGR+AVRDM+QTVAVGVIK VEKKD
Sbjct:  360 KFETIHDKIDRRTGKSQEENPKFIKNGDAALVTLIPTKALCVEVFQEYPPLGRYAVRDMKQTVAVGVIKKVEKKD 434          
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A1_EUPCR (Elongation factor 1-alpha 1 OS=Euplotes crassus GN=EFA1 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.412e-23
Identity = 50/74 (67.57%), Postives = 63/74 (85.14%), Query Frame = -3
Query:  248 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 469
            KF EL+TK D+RSGK  E+ PKFLK GDAG++++ P+KP+ VETF+ Y PLGRFAVRDMRQTVAVGVI+ ++KK
Sbjct:  359 KFEELLTKADKRSGKMTEENPKFLKAGDAGLIRLSPSKPLCVETFATYAPLGRFAVRDMRQTVAVGVIQEIKKK 432          
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A_CRYPV (Elongation factor 1-alpha OS=Cryptosporidium parvum PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.844e-23
Identity = 51/77 (66.23%), Postives = 62/77 (80.52%), Query Frame = -3
Query:  239 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPT 469
            KF  +  K+D+RSGK LE+ PK +K+GDA +V M P KP+ VE F+DYPPLGRFAVRDM+QTVAVGVIKSV KK+ T
Sbjct:  355 KFQTITAKMDKRSGKVLEENPKLIKSGDAALVVMQPLKPLCVEAFTDYPPLGRFAVRDMKQTVAVGVIKSVTKKEAT 431          
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A_EUGGR (Elongation factor 1-alpha OS=Euglena gracilis GN=TEF PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.409e-23
Identity = 55/78 (70.51%), Postives = 64/78 (82.05%), Query Frame = -3
Query:  236 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 469
            KF+ + TKIDRRSGKELE EPKF+K+GDA +V M P KPM VE+F+DYPPLG  +  DMRQTVAVGVIKSV KK+ TG
Sbjct:  359 KFATIQTKIDRRSGKELEAEPKFIKSGDAAIVLMKPQKPMCVESFTDYPPLG-VSCGDMRQTVAVGVIKSVNKKENTG 435          
BLAST of CF504166 vs. ExPASy Swiss-Prot
Match: EF1A_RHYAM (Elongation factor 1-alpha (Fragment) OS=Rhynchosciara americana PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.008e-23
Identity = 51/78 (65.38%), Postives = 63/78 (80.77%), Query Frame = -3
Query:  236 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 469
            KF+E+  K+DRRSGK  E  PK +K+GDA +V + P+KP+ VE+F ++PPLGRFAVRDMRQTVAVGVIKSV  KD TG
Sbjct:  320 KFAEIKXKVDRRSGKSTEDNPKAIKSGDAAIVILQPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKSVVFKDATG 397          
The following BLAST results are available for this feature:
BLAST of CF504166 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
EF1A_CRYNE2.574e-2567.95Elongation factor 1-alpha OS=Cryptococcus neoforma... [more]
EF1A4_OSCTI4.390e-2572.00Elongation factor 1-alpha 4 OS=Oscheius tipulae GN... [more]
EF1A_EIMBO9.779e-2567.95Elongation factor 1-alpha (Fragment) OS=Eimeria bo... [more]
EF1A1_DROME2.845e-2464.10Elongation factor 1-alpha 1 OS=Drosophila melanoga... [more]
EF1A_HYDAT6.339e-2471.23Elongation factor 1-alpha OS=Hydra attenuata PE=2 ... [more]
EF1A_TETPY8.279e-2468.00Elongation factor 1-alpha OS=Tetrahymena pyriformi... [more]
EF1A1_EUPCR1.412e-2367.57Elongation factor 1-alpha 1 OS=Euplotes crassus GN... [more]
EF1A_CRYPV1.844e-2366.23Elongation factor 1-alpha OS=Cryptosporidium parvu... [more]
EF1A_EUGGR2.409e-2370.51Elongation factor 1-alpha OS=Euglena gracilis GN=T... [more]
EF1A_RHYAM7.008e-2365.38Elongation factor 1-alpha (Fragment) OS=Rhynchosci... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-654 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504166 ID=CF504166; Name=CF504166; organism=Citrus sinensis; type=EST; length=474bp
CCAAATTCAGAATATAAAAATCCGAACACCCACCACAGCCAGTTAAGCAG
AAAGATAACATCCCAATTGCTCAACAGCAAACTGGTGGAAGCAAATAGGG
CTGTTTGCAGAAACATTGATGCAAAACAAAAACAGACAAGAAAATAAAAA
AAGACAGAAAATAAACCCTAACTATTGTAGACAGACCCATAAAAATTTCT
CATTTCTTCTTGGCTGCGGACTTGGTGACCTTCGCACCTGTGGGATCCTT
CTTCTCAACACTCTTGATAACACCCACAGCAACAGTCTGACGCATGTCCC
TAACAGCAAAACGACCAAGGGGTGGGTAATCGGAGAAGGTTTCAACAACC
ATGGGCTTGGTGGGAATCATCTTAACCATTCCGGCGTCTCCATTCTTCAA
GAACTTGGGCTCCTTCTCAAGCTCCTTGCCTGATCGCCTATCAATCTTCG
TCACGAGCTCAGAAAACTTGACGG
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