CF504168

Overview
NameCF504168
Unique NameCF504168
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length384
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF504168_ssr85 microsatellite CF504168_ssr85:85..96. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1768 contig Csv1_Contig1768:80..463. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504168 vs. ExPASy Swiss-Prot
Match: YAB5_ARATH (Axial regulator YABBY 5 OS=Arabidopsis thaliana GN=YAB5 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.919e-14
Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = 3
Query:  189 SSEQLCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLL 335
            ++EQLCY+ C FC+ +LAV+VPC+SLF  VTVRCGHCTNL SVNM   L
Sbjct:    7 ATEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAAL 55          
BLAST of CF504168 vs. ExPASy Swiss-Prot
Match: YABDL_ORYSJ (Protein DROOPING LEAF OS=Oryza sativa subsp. japonica GN=DL PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.796e-12
Identity = 36/70 (51.43%), Postives = 45/70 (64.29%), Query Frame = 3
Query:  177 DHLSSSEQLCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMR-GLLLPAANQLHLGHPFFTP 383
            D +S SE LCYV CT+C+TVLAV VPC  L  TVTV+CGHC NL  ++ R  ++ P +   H   PF  P
Sbjct:    2 DLVSPSEHLCYVRCTYCNTVLAVGVPCKRLMDTVTVKCGHCNNLSFLSPRPPMVQPLSPTDHPLGPFQGP 71          
BLAST of CF504168 vs. ExPASy Swiss-Prot
Match: YAB4_ARATH (Axial regulator YABBY 4 OS=Arabidopsis thaliana GN=YAB4 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.593e-11
Identity = 33/58 (56.90%), Postives = 39/58 (67.24%), Query Frame = 3
Query:  198 QLCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVN-MRGLLLPAANQLHLGH 368
            Q+C+V C FC T+L VSVP TSL   VTVRCGHCT+LLSVN M+   +P      L H
Sbjct:   20 QICHVQCGFCTTILLVSVPFTSLSMVVTVRCGHCTSLLSVNLMKASFIPLHLLASLSH 77          
The following BLAST results are available for this feature:
BLAST of CF504168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
YAB5_ARATH1.919e-1467.35Axial regulator YABBY 5 OS=Arabidopsis thaliana GN... [more]
YABDL_ORYSJ1.796e-1251.43Protein DROOPING LEAF OS=Oryza sativa subsp. japon... [more]
YAB4_ARATH2.593e-1156.90Axial regulator YABBY 4 OS=Arabidopsis thaliana GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-656 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_F05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504168 ID=CF504168; Name=CF504168; organism=Citrus sinensis; type=EST; length=384bp
TTTATATCTATAGTACTTAACAATCAAGAAGATCAGAACAAGTTGGGATT
TTATCATCCCATCAGTCCACTGATCAGTCAGTCCATCAATCAATCAAATC
AAAACTAAAAAAATTAAAGAATCAGGATAATCAAAGAAACAGGATGTCAT
CCTCAACACCTGCTGCTTTGTCACCGGACCATCTCTCTTCCTCCGAGCAG
CTCTGTTACGTCCACTGCACCTTTTGCGACACTGTCCTCGCGGTGAGTGT
TCCTTGCACTAGTTTGTTCAAGACTGTGACGGTTCGCTGCGGCCATTGCA
CCAATCTTTTGTCTGTGAACATGCGCGGCCTGCTGCTTCCTGCAGCTAAT
CAGCTTCATCTGGGTCATCCTTTCTTCACTCCTC
back to top