CF504169

Overview
NameCF504169
Unique NameCF504169
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length394
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RB11A_PONAB (Ras-related protein Rab-11A OS=Pongo abelii GN=RAB11A PE=2 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 1.885e-22
Identity = 50/90 (55.56%), Postives = 65/90 (72.22%), Query Frame = 2
Query:  128 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            T   E+DYLFK++LIGDSGVGKS LL  FT + F  E   TIGV+F  + + + GK +K  IWDTAGQER++ +TS+YYRGA G ++ YD
Sbjct:    3 TRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 92          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RB11A_PIG (Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11A PE=2 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 1.885e-22
Identity = 50/90 (55.56%), Postives = 65/90 (72.22%), Query Frame = 2
Query:  128 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            T   E+DYLFK++LIGDSGVGKS LL  FT + F  E   TIGV+F  + + + GK +K  IWDTAGQER++ +TS+YYRGA G ++ YD
Sbjct:    3 TRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 92          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RB11A_MOUSE (Ras-related protein Rab-11A OS=Mus musculus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 1.885e-22
Identity = 50/90 (55.56%), Postives = 65/90 (72.22%), Query Frame = 2
Query:  128 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            T   E+DYLFK++LIGDSGVGKS LL  FT + F  E   TIGV+F  + + + GK +K  IWDTAGQER++ +TS+YYRGA G ++ YD
Sbjct:    3 TRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 92          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RB11A_HUMAN (Ras-related protein Rab-11A OS=Homo sapiens GN=RAB11A PE=1 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 1.885e-22
Identity = 50/90 (55.56%), Postives = 65/90 (72.22%), Query Frame = 2
Query:  128 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            T   E+DYLFK++LIGDSGVGKS LL  FT + F  E   TIGV+F  + + + GK +K  IWDTAGQER++ +TS+YYRGA G ++ YD
Sbjct:    3 TRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 92          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RB11A_CANFA (Ras-related protein Rab-11A OS=Canis familiaris GN=RAB11A PE=2 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 1.885e-22
Identity = 50/90 (55.56%), Postives = 65/90 (72.22%), Query Frame = 2
Query:  128 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            T   E+DYLFK++LIGDSGVGKS LL  FT + F  E   TIGV+F  + + + GK +K  IWDTAGQER++ +TS+YYRGA G ++ YD
Sbjct:    3 TRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 92          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RB11A_BOVIN (Ras-related protein Rab-11A OS=Bos taurus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 1.885e-22
Identity = 50/90 (55.56%), Postives = 65/90 (72.22%), Query Frame = 2
Query:  128 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            T   E+DYLFK++LIGDSGVGKS LL  FT + F  E   TIGV+F  + + + GK +K  IWDTAGQER++ +TS+YYRGA G ++ YD
Sbjct:    3 TRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 92          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB18_DICDI (Ras-related protein Rab-18 OS=Dictyostelium discoideum GN=rab18 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.885e-22
Identity = 52/86 (60.47%), Postives = 67/86 (77.91%), Query Frame = 2
Query:  140 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            E D  +K+LLIGDS VGK++++  F+ DTF+E L  TIGV+FK+K V + GKK+ L IWDTAGQE+F+ L SSYYRGA GII+ YD
Sbjct:    2 EEDKQYKVLLIGDSDVGKTSIVKRFSDDTFDEDLLCTIGVEFKMKEVKVDGKKVDLCIWDTAGQEKFRALISSYYRGAHGIILTYD 87          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: YPT32_YEAST (GTP-binding protein YPT32/YPT11 OS=Saccharomyces cerevisiae GN=YPT32 PE=1 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 2.462e-22
Identity = 50/94 (53.19%), Postives = 68/94 (72.34%), Query Frame = 2
Query:  116 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            M++     ++DYLFK++LIGDSGVGKS LL  FT+D F  E   TIGV+F  + + +  KK+K  IWDTAGQER++ +TS+YYRGA G ++ YD
Sbjct:    1 MSNEDYGYDYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYD 94          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB3_DROME (Ras-related protein Rab-3 OS=Drosophila melanogaster GN=Rab3 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.215e-22
Identity = 47/89 (52.81%), Postives = 66/89 (74.16%), Query Frame = 2
Query:  131 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            + Q FDY+FKLL+IG+S VGK++ L  +  D+F      T+G+DFK+K V    K++KL IWDTAGQER++T+T++YYRGA G I+ YD
Sbjct:   14 ADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYD 102          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB3D_RAT (GTP-binding protein Rab-3D OS=Rattus norvegicus GN=Rab3d PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 3.215e-22
Identity = 47/89 (52.81%), Postives = 66/89 (74.16%), Query Frame = 2
Query:  131 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            + Q FDY+FKLLLIG+S VGK++ L  +  D+F      T+G+DFK+K V    K++KL IWDTAGQER++T+T++YYRGA G ++ YD
Sbjct:   15 ADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYD 103          
The following BLAST results are available for this feature:
BLAST of CF504169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 370
Match NameE-valueIdentityDescription
RB11A_PONAB1.885e-2255.56Ras-related protein Rab-11A OS=Pongo abelii GN=RAB... [more]
RB11A_PIG1.885e-2255.56Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11... [more]
RB11A_MOUSE1.885e-2255.56Ras-related protein Rab-11A OS=Mus musculus GN=Rab... [more]
RB11A_HUMAN1.885e-2255.56Ras-related protein Rab-11A OS=Homo sapiens GN=RAB... [more]
RB11A_CANFA1.885e-2255.56Ras-related protein Rab-11A OS=Canis familiaris GN... [more]
RB11A_BOVIN1.885e-2255.56Ras-related protein Rab-11A OS=Bos taurus GN=RAB11... [more]
RAB18_DICDI1.885e-2260.47Ras-related protein Rab-18 OS=Dictyostelium discoi... [more]
YPT32_YEAST2.462e-2253.19GTP-binding protein YPT32/YPT11 OS=Saccharomyces c... [more]
RAB3_DROME3.215e-2252.81Ras-related protein Rab-3 OS=Drosophila melanogast... [more]
RAB3D_RAT3.215e-2252.81GTP-binding protein Rab-3D OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-657 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504169 ID=CF504169; Name=CF504169; organism=Citrus sinensis; type=EST; length=394bp
ATTTGCTTTTCCTGTTTTTTGCCTTCACATTGCTTAACATTTTATCAAAA
CATCAGCTTCGGATCCAAAGCCATCAGCTTGAACCCAAAAGTCTTCGTTT
TTATTTGTTTGTTTGATGGCTTCTTCAACGAGTCAGCAGGAGTTCGATTA
CTTGTTTAAGTTGCTGTTAATTGGAGATTCTGGGGTTGGCAAGAGTACTT
TGCTATTGAGTTTCACTTCTGATACCTTTGAGGAGCTCTCTCCTACCATT
GGTGTGGATTTTAAGATAAAGCATGTTACTCTTGGTGGTAAAAAATTGAA
GCTTGCCATTTGGGACACGGCTGGGCAGGAAAGATTTAAAACACTAACTA
GTTCCTATTACAGGGGAGCCCAAGGGATAATCATGGGTTATGAT
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