CF504169

Overview
NameCF504169
Unique NameCF504169
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length394
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB30_MOUSE (Ras-related protein Rab-30 OS=Mus musculus GN=Rab30 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.596e-21
Identity = 48/89 (53.93%), Postives = 66/89 (74.16%), Query Frame = 2
Query:  131 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            S +++D+LFK++LIG++GVGK+ L+  FT   F      TIGVDF IK V + G+K+KL IWDTAGQERF+++T SYYR A  +I+ YD
Sbjct:    2 SMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYD 90          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB30_HUMAN (Ras-related protein Rab-30 OS=Homo sapiens GN=RAB30 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 1.596e-21
Identity = 48/89 (53.93%), Postives = 66/89 (74.16%), Query Frame = 2
Query:  131 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            S +++D+LFK++LIG++GVGK+ L+  FT   F      TIGVDF IK V + G+K+KL IWDTAGQERF+++T SYYR A  +I+ YD
Sbjct:    2 SMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYD 90          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB30_BOVIN (Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.596e-21
Identity = 48/89 (53.93%), Postives = 66/89 (74.16%), Query Frame = 2
Query:  131 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            S +++D+LFK++LIG++GVGK+ L+  FT   F      TIGVDF IK V + G+K+KL IWDTAGQERF+++T SYYR A  +I+ YD
Sbjct:    2 SMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYD 90          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB19_XENLA (Ras-related protein Rab-19 OS=Xenopus laevis GN=rab19 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.596e-21
Identity = 47/91 (51.65%), Postives = 64/91 (70.33%), Query Frame = 2
Query:  125 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            S     FD+LFK++LIGDS VGK+ ++  F S  F +    TIGVDF ++ + + GKK+K+ +WDTAGQERF+T+T SYYR A G I+ YD
Sbjct:    6 SLEDDPFDFLFKIILIGDSNVGKTCVVHRFQSGIFMDNQQNTIGVDFTVRSLNINGKKVKVQVWDTAGQERFRTITQSYYRSAHGAIIAYD 96          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4)

HSP 1 Score: 101.293 bits (251), Expect = 1.596e-21
Identity = 49/87 (56.32%), Postives = 64/87 (73.56%), Query Frame = 2
Query:  137 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            QE+DYLFK++LIGDSGVGKS +L  FT + F  E   TIGV+F  +   + GK +K  IWDTAGQER++ +TS+YYRGA G ++ YD
Sbjct:    7 QEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQVEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 93          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB19_RAT (Ras-related protein Rab-19 OS=Rattus norvegicus GN=Rab19 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.084e-21
Identity = 47/93 (50.54%), Postives = 65/93 (69.89%), Query Frame = 2
Query:  119 ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            A+ T  +  DYLFK++LIGDS VGK+ ++  F S  + E    TIGVDF ++ + + GKK+K+ +WDTAGQERF+T+T SYYR A   I+ YD
Sbjct:    6 AARTVDENVDYLFKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSLEIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYD 98          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB43_HUMAN (Ras-related protein Rab-43 OS=Homo sapiens GN=RAB43 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.722e-21
Identity = 46/87 (52.87%), Postives = 65/87 (74.71%), Query Frame = 2
Query:  137 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            +++D+LFKL+L+GD+ VGK+ ++  F +  F E    TIGVDF +K + + GK++KL IWDTAGQERF+T+T SYYR A G I+ YD
Sbjct:   13 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYD 99          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB2_LYMST (Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.555e-21
Identity = 47/85 (55.29%), Postives = 64/85 (75.29%), Query Frame = 2
Query:  143 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            + YLFK ++IGD+GVGKS LLL FT   F+ +   TIGV+F  + +T+ GK++KL IWDTAGQE F+++T SYYRGA G ++ YD
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB2A_RABIT (Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.555e-21
Identity = 47/85 (55.29%), Postives = 64/85 (75.29%), Query Frame = 2
Query:  143 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            + YLFK ++IGD+GVGKS LLL FT   F+ +   TIGV+F  + +T+ GK++KL IWDTAGQE F+++T SYYRGA G ++ YD
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB2A_PONAB (Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.555e-21
Identity = 47/85 (55.29%), Postives = 64/85 (75.29%), Query Frame = 2
Query:  143 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            + YLFK ++IGD+GVGKS LLL FT   F+ +   TIGV+F  + +T+ GK++KL IWDTAGQE F+++T SYYRGA G ++ YD
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87          
The following BLAST results are available for this feature:
BLAST of CF504169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 370
Match NameE-valueIdentityDescription
RAB30_MOUSE1.596e-2153.93Ras-related protein Rab-30 OS=Mus musculus GN=Rab3... [more]
RAB30_HUMAN1.596e-2153.93Ras-related protein Rab-30 OS=Homo sapiens GN=RAB3... [more]
RAB30_BOVIN1.596e-2153.93Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 ... [more]
RAB19_XENLA1.596e-2151.65Ras-related protein Rab-19 OS=Xenopus laevis GN=ra... [more]
RAA2C_ARATH1.596e-2156.32Ras-related protein RABA2c OS=Arabidopsis thaliana... [more]
RAB19_RAT2.084e-2150.54Ras-related protein Rab-19 OS=Rattus norvegicus GN... [more]
RAB43_HUMAN2.722e-2152.87Ras-related protein Rab-43 OS=Homo sapiens GN=RAB4... [more]
RAB2_LYMST3.555e-2155.29Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=... [more]
RAB2A_RABIT3.555e-2155.29Ras-related protein Rab-2A OS=Oryctolagus cuniculu... [more]
RAB2A_PONAB3.555e-2155.29Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-657 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504169 ID=CF504169; Name=CF504169; organism=Citrus sinensis; type=EST; length=394bp
ATTTGCTTTTCCTGTTTTTTGCCTTCACATTGCTTAACATTTTATCAAAA
CATCAGCTTCGGATCCAAAGCCATCAGCTTGAACCCAAAAGTCTTCGTTT
TTATTTGTTTGTTTGATGGCTTCTTCAACGAGTCAGCAGGAGTTCGATTA
CTTGTTTAAGTTGCTGTTAATTGGAGATTCTGGGGTTGGCAAGAGTACTT
TGCTATTGAGTTTCACTTCTGATACCTTTGAGGAGCTCTCTCCTACCATT
GGTGTGGATTTTAAGATAAAGCATGTTACTCTTGGTGGTAAAAAATTGAA
GCTTGCCATTTGGGACACGGCTGGGCAGGAAAGATTTAAAACACTAACTA
GTTCCTATTACAGGGGAGCCCAAGGGATAATCATGGGTTATGAT
back to top