CF504169

Overview
NameCF504169
Unique NameCF504169
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length394
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: YPT1_YEAST (GTP-binding protein YPT1 OS=Saccharomyces cerevisiae GN=YPT1 PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 1.490e-27
Identity = 61/86 (70.93%), Postives = 71/86 (82.56%), Query Frame = 2
Query:  140 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            E+DYLFKLLLIG+SGVGKS LLL F+ DT+  +   TIGVDFKIK V L GK +KL IWDTAGQERF+T+TSSYYRG+ GII+ YD
Sbjct:    4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYD 89          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 1.946e-27
Identity = 61/86 (70.93%), Postives = 70/86 (81.40%), Query Frame = 2
Query:  140 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            E+DYLFKLLLIGDSGVGKS LLL F+ D++ E    TIGVDFKI+ V   GK +KL IWDTAGQERF+T+TSSYYRGA GII+ YD
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 89          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB1A_DICDI (Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 1.946e-27
Identity = 60/86 (69.77%), Postives = 69/86 (80.23%), Query Frame = 2
Query:  140 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            ++ YLFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +KL IWDTAGQERF+T+TSSYYRGA GII+ YD
Sbjct:    4 DYHYLFKLLLIGDSGVGKSCLLLRFADDTYSESFISTIGVDFKIRTIELNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYD 89          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 2.542e-27
Identity = 61/86 (70.93%), Postives = 69/86 (80.23%), Query Frame = 2
Query:  140 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            E+DYLFKLLLIGDSGVGKS LLL F  D++ E    TIGVDFKI+ V   GK +KL IWDTAGQERF+T+TSSYYRGA GII+ YD
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYD 89          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB1B_PIG (Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.542e-27
Identity = 61/86 (70.93%), Postives = 69/86 (80.23%), Query Frame = 2
Query:  140 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            E+DYLFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +KL IWDTAGQER +T+TSSYYRGA GII+ YD
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERGRTITSSYYRGAHGIIVVYD 89          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: YPTM2_MAIZE (GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.662e-27
Identity = 60/86 (69.77%), Postives = 69/86 (80.23%), Query Frame = 2
Query:  140 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            E+DYLFKLLLIGDSGVGKS LLL F  D++ +    TIGVDFKI+ V   GK +KL IWDTAGQERF+T+TSSYYRGA GII+ YD
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 89          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RB18A_LYMST (Ras-related protein Rab-18A OS=Lymnaea stagnalis GN=RAB18A PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.662e-27
Identity = 59/88 (67.05%), Postives = 72/88 (81.82%), Query Frame = 2
Query:  134 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            +QE     K+L+IG+SGVGKS+LLL FT DTF+ E + TIGVDFK+K +T+ G K KLAIWDTAGQERF+TLT SYYRGAQG+I+ YD
Sbjct:    3 EQEIITTLKILIIGESGVGKSSLLLRFTEDTFDPEQAATIGVDFKVKTLTVEGNKTKLAIWDTAGQERFRTLTPSYYRGAQGVILVYD 90          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB18_RAT (Ras-related protein Rab-18 OS=Rattus norvegicus GN=Rab18 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.395e-27
Identity = 57/80 (71.25%), Postives = 70/80 (87.50%), Query Frame = 2
Query:  158 KLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +++ G K KLAIWDTAGQERF+TLT SYYRGAQG+I+ YD
Sbjct:   10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYD 89          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB18_PONAB (Ras-related protein Rab-18 OS=Pongo abelii GN=RAB18 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.395e-27
Identity = 57/80 (71.25%), Postives = 70/80 (87.50%), Query Frame = 2
Query:  158 KLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +++ G K KLAIWDTAGQERF+TLT SYYRGAQG+I+ YD
Sbjct:   10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYD 89          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB18_MOUSE (Ras-related protein Rab-18 OS=Mus musculus GN=Rab18 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 7.395e-27
Identity = 57/80 (71.25%), Postives = 70/80 (87.50%), Query Frame = 2
Query:  158 KLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +++ G K KLAIWDTAGQERF+TLT SYYRGAQG+I+ YD
Sbjct:   10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYD 89          
The following BLAST results are available for this feature:
BLAST of CF504169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 370
Match NameE-valueIdentityDescription
YPT1_YEAST1.490e-2770.93GTP-binding protein YPT1 OS=Saccharomyces cerevisi... [more]
RBD2A_ARATH1.946e-2770.93Ras-related protein RABD2A OS=Arabidopsis thaliana... [more]
RAB1A_DICDI1.946e-2769.77Ras-related protein Rab-1A OS=Dictyostelium discoi... [more]
RIC1_ORYSJ2.542e-2770.93Ras-related protein RIC1 OS=Oryza sativa subsp. ja... [more]
RAB1B_PIG2.542e-2770.93Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B ... [more]
YPTM2_MAIZE5.662e-2769.77GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=... [more]
RB18A_LYMST5.662e-2767.05Ras-related protein Rab-18A OS=Lymnaea stagnalis G... [more]
RAB18_RAT7.395e-2771.25Ras-related protein Rab-18 OS=Rattus norvegicus GN... [more]
RAB18_PONAB7.395e-2771.25Ras-related protein Rab-18 OS=Pongo abelii GN=RAB1... [more]
RAB18_MOUSE7.395e-2771.25Ras-related protein Rab-18 OS=Mus musculus GN=Rab1... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-657 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504169 ID=CF504169; Name=CF504169; organism=Citrus sinensis; type=EST; length=394bp
ATTTGCTTTTCCTGTTTTTTGCCTTCACATTGCTTAACATTTTATCAAAA
CATCAGCTTCGGATCCAAAGCCATCAGCTTGAACCCAAAAGTCTTCGTTT
TTATTTGTTTGTTTGATGGCTTCTTCAACGAGTCAGCAGGAGTTCGATTA
CTTGTTTAAGTTGCTGTTAATTGGAGATTCTGGGGTTGGCAAGAGTACTT
TGCTATTGAGTTTCACTTCTGATACCTTTGAGGAGCTCTCTCCTACCATT
GGTGTGGATTTTAAGATAAAGCATGTTACTCTTGGTGGTAAAAAATTGAA
GCTTGCCATTTGGGACACGGCTGGGCAGGAAAGATTTAAAACACTAACTA
GTTCCTATTACAGGGGAGCCCAAGGGATAATCATGGGTTATGAT
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