CF504169

Overview
NameCF504169
Unique NameCF504169
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length394
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB13_HUMAN (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.395e-25
Identity = 54/85 (63.53%), Postives = 68/85 (80.00%), Query Frame = 2
Query:  143 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            +D+LFKLLLIGDSGVGK+ L++ F  D F      TIG+DFKI+ V + GKK+KL +WDTAGQERFKT+T++YYRGA GII+ YD
Sbjct:    5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYD 89          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.821e-25
Identity = 54/89 (60.67%), Postives = 71/89 (79.78%), Query Frame = 2
Query:  131 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            ++ ++DYL KLLLIGDSGVGKS LLL F+  +F      TIG+DFKI+ + L GK++KL IWDTAGQERF+T+T++YYRGA GI++ YD
Sbjct:    8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.821e-25
Identity = 54/89 (60.67%), Postives = 71/89 (79.78%), Query Frame = 2
Query:  131 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            ++ ++DYL KLLLIGDSGVGKS LLL F+  +F      TIG+DFKI+ + L GK++KL IWDTAGQERF+T+T++YYRGA GI++ YD
Sbjct:    8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB8A_RAT (Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 2.379e-25
Identity = 53/85 (62.35%), Postives = 68/85 (80.00%), Query Frame = 2
Query:  143 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            +DYLFKLLLIGDSGVGK+ +L  F+ D F      TIG+DFKI+ + L GK++KL IWDTAGQERF+T+T++YYRGA GI++ YD
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYD 89          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB8A_PONAB (Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.379e-25
Identity = 53/85 (62.35%), Postives = 68/85 (80.00%), Query Frame = 2
Query:  143 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            +DYLFKLLLIGDSGVGK+ +L  F+ D F      TIG+DFKI+ + L GK++KL IWDTAGQERF+T+T++YYRGA GI++ YD
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYD 89          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB8A_MOUSE (Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 2.379e-25
Identity = 53/85 (62.35%), Postives = 68/85 (80.00%), Query Frame = 2
Query:  143 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            +DYLFKLLLIGDSGVGK+ +L  F+ D F      TIG+DFKI+ + L GK++KL IWDTAGQERF+T+T++YYRGA GI++ YD
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYD 89          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB8A_MACFA (Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.379e-25
Identity = 53/85 (62.35%), Postives = 68/85 (80.00%), Query Frame = 2
Query:  143 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            +DYLFKLLLIGDSGVGK+ +L  F+ D F      TIG+DFKI+ + L GK++KL IWDTAGQERF+T+T++YYRGA GI++ YD
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYD 89          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB8A_HUMAN (Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.379e-25
Identity = 53/85 (62.35%), Postives = 68/85 (80.00%), Query Frame = 2
Query:  143 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            +DYLFKLLLIGDSGVGK+ +L  F+ D F      TIG+DFKI+ + L GK++KL IWDTAGQERF+T+T++YYRGA GI++ YD
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYD 89          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB8A_CANFA (Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.379e-25
Identity = 53/85 (62.35%), Postives = 68/85 (80.00%), Query Frame = 2
Query:  143 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            +DYLFKLLLIGDSGVGK+ +L  F+ D F      TIG+DFKI+ + L GK++KL IWDTAGQERF+T+T++YYRGA GI++ YD
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYD 89          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB8A_BOVIN (Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.379e-25
Identity = 53/85 (62.35%), Postives = 68/85 (80.00%), Query Frame = 2
Query:  143 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            +DYLFKLLLIGDSGVGK+ +L  F+ D F      TIG+DFKI+ + L GK++KL IWDTAGQERF+T+T++YYRGA GI++ YD
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYD 89          
The following BLAST results are available for this feature:
BLAST of CF504169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 370
Match NameE-valueIdentityDescription
RAB13_HUMAN1.395e-2563.53Ras-related protein Rab-13 OS=Homo sapiens GN=RAB1... [more]
RB1BV_BETVU1.821e-2560.67Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]
ARA3_ARATH1.821e-2560.67Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]
RAB8A_RAT2.379e-2562.35Ras-related protein Rab-8A OS=Rattus norvegicus GN... [more]
RAB8A_PONAB2.379e-2562.35Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8... [more]
RAB8A_MOUSE2.379e-2562.35Ras-related protein Rab-8A OS=Mus musculus GN=Rab8... [more]
RAB8A_MACFA2.379e-2562.35Ras-related protein Rab-8A OS=Macaca fascicularis ... [more]
RAB8A_HUMAN2.379e-2562.35Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8... [more]
RAB8A_CANFA2.379e-2562.35Ras-related protein Rab-8A OS=Canis familiaris GN=... [more]
RAB8A_BOVIN2.379e-2562.35Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-657 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504169 ID=CF504169; Name=CF504169; organism=Citrus sinensis; type=EST; length=394bp
ATTTGCTTTTCCTGTTTTTTGCCTTCACATTGCTTAACATTTTATCAAAA
CATCAGCTTCGGATCCAAAGCCATCAGCTTGAACCCAAAAGTCTTCGTTT
TTATTTGTTTGTTTGATGGCTTCTTCAACGAGTCAGCAGGAGTTCGATTA
CTTGTTTAAGTTGCTGTTAATTGGAGATTCTGGGGTTGGCAAGAGTACTT
TGCTATTGAGTTTCACTTCTGATACCTTTGAGGAGCTCTCTCCTACCATT
GGTGTGGATTTTAAGATAAAGCATGTTACTCTTGGTGGTAAAAAATTGAA
GCTTGCCATTTGGGACACGGCTGGGCAGGAAAGATTTAAAACACTAACTA
GTTCCTATTACAGGGGAGCCCAAGGGATAATCATGGGTTATGAT
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