CF504169
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB18_CAEBR (Ras-related protein Rab-18 OS=Caenorhabditis briggsae GN=rab-18 PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 9.995e-24 Identity = 51/80 (63.75%), Postives = 66/80 (82.50%), Query Frame = 2 Query: 158 KLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394 K+L+IG+SGVGKS+L+L F D F+ E + TIGVDF++ +T+ G ++KLAIWDTAGQERF+TLT SYYRGAQG+I YD Sbjct: 13 KILIIGESGVGKSSLMLRFVDDVFDPEQAATIGVDFRVTSMTIDGNRVKLAIWDTAGQERFRTLTPSYYRGAQGVICVYD 92
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 2.227e-23 Identity = 53/94 (56.38%), Postives = 67/94 (71.28%), Query Frame = 2 Query: 116 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394 MA + E+DYLFKL+LIGDSGVGKS LL FT + F E TIGV+F K + + GK +K IWDTAGQER++ +TS+YYRGA G ++ YD Sbjct: 1 MAGYKADDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 94
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RB11A_DICDI (Ras-related protein Rab-11A OS=Dictyostelium discoideum GN=rab11A PE=1 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 2.227e-23 Identity = 51/94 (54.26%), Postives = 68/94 (72.34%), Query Frame = 2 Query: 116 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394 M S SQ+E+DYL+K++LIGDSGVGKS LL FT + F E TIGV+F + + GK +K +WDTAGQER++ +TS+YYRGA G ++ YD Sbjct: 1 MTSKGSQEEYDYLYKIVLIGDSGVGKSNLLSRFTRNEFSLETKSTIGVEFATRTIQTEGKTIKAQVWDTAGQERYRAITSAYYRGAVGALLVYD 94
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB18_CAEEL (Ras-related protein Rab-18 OS=Caenorhabditis elegans GN=rab-18 PE=2 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 3.798e-23 Identity = 50/80 (62.50%), Postives = 65/80 (81.25%), Query Frame = 2 Query: 158 KLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394 K+L+IG+SGVGKS+L+L F D F+ E + TIGVDF++ + + G ++KLAIWDTAGQERF+TLT SYYRGAQG+I YD Sbjct: 13 KILIIGESGVGKSSLMLRFVDDVFDPEQAATIGVDFRVTSMAIDGNRVKLAIWDTAGQERFRTLTPSYYRGAQGVICVYD 92
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 4.960e-23 Identity = 50/88 (56.82%), Postives = 66/88 (75.00%), Query Frame = 2 Query: 134 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394 + E+DYLFK +LIGDSGVGKS LL+ FT + F E TIGV+F +++ L KK+K IWDTAGQER++ +TS+YYRGA G ++ YD Sbjct: 4 EDEYDYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYD 91
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB3_CAEEL (Ras-related protein Rab-3 OS=Caenorhabditis elegans GN=rab-3 PE=2 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 6.478e-23 Identity = 48/87 (55.17%), Postives = 66/87 (75.86%), Query Frame = 2 Query: 137 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394 Q FDY+FKLL+IG+S VGK++ L + D+F T+G+DFK+K V G K++KL IWDTAGQER++T+T++YYRGA G I+ YD Sbjct: 17 QNFDYMFKLLIIGNSSVGKTSFLFRYCDDSFTSAFVSTVGIDFKVKTVFRGDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYD 103
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB3C_RAT (Ras-related protein Rab-3C OS=Rattus norvegicus GN=Rab3c PE=1 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 6.478e-23 Identity = 48/90 (53.33%), Postives = 67/90 (74.44%), Query Frame = 2 Query: 128 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394 +S Q FDY+FKLL+IG+S VGK++ L + D+F T+G+DFK+K V K++KL IWDTAGQER++T+T++YYRGA G I+ YD Sbjct: 22 SSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYD 111
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB3C_MOUSE (Ras-related protein Rab-3C OS=Mus musculus GN=Rab3c PE=1 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 6.478e-23 Identity = 48/90 (53.33%), Postives = 67/90 (74.44%), Query Frame = 2 Query: 128 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394 +S Q FDY+FKLL+IG+S VGK++ L + D+F T+G+DFK+K V K++KL IWDTAGQER++T+T++YYRGA G I+ YD Sbjct: 22 SSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYD 111
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB3C_HUMAN (Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3C PE=2 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 6.478e-23 Identity = 48/90 (53.33%), Postives = 67/90 (74.44%), Query Frame = 2 Query: 128 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394 +S Q FDY+FKLL+IG+S VGK++ L + D+F T+G+DFK+K V K++KL IWDTAGQER++T+T++YYRGA G I+ YD Sbjct: 22 SSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYD 111
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB3C_BOVIN (Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C PE=2 SV=3) HSP 1 Score: 105.916 bits (263), Expect = 6.478e-23 Identity = 48/90 (53.33%), Postives = 67/90 (74.44%), Query Frame = 2 Query: 128 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394 +S Q FDY+FKLL+IG+S VGK++ L + D+F T+G+DFK+K V K++KL IWDTAGQER++T+T++YYRGA G I+ YD Sbjct: 22 SSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYD 111 The following BLAST results are available for this feature:
BLAST of CF504169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 370
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF504169 ID=CF504169; Name=CF504169; organism=Citrus sinensis; type=EST; length=394bpback to top |