CF504169

Overview
NameCF504169
Unique NameCF504169
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length394
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB18_CAEBR (Ras-related protein Rab-18 OS=Caenorhabditis briggsae GN=rab-18 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 9.995e-24
Identity = 51/80 (63.75%), Postives = 66/80 (82.50%), Query Frame = 2
Query:  158 KLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            K+L+IG+SGVGKS+L+L F  D F+ E + TIGVDF++  +T+ G ++KLAIWDTAGQERF+TLT SYYRGAQG+I  YD
Sbjct:   13 KILIIGESGVGKSSLMLRFVDDVFDPEQAATIGVDFRVTSMTIDGNRVKLAIWDTAGQERFRTLTPSYYRGAQGVICVYD 92          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.227e-23
Identity = 53/94 (56.38%), Postives = 67/94 (71.28%), Query Frame = 2
Query:  116 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            MA   +  E+DYLFKL+LIGDSGVGKS LL  FT + F  E   TIGV+F  K + + GK +K  IWDTAGQER++ +TS+YYRGA G ++ YD
Sbjct:    1 MAGYKADDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 94          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RB11A_DICDI (Ras-related protein Rab-11A OS=Dictyostelium discoideum GN=rab11A PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.227e-23
Identity = 51/94 (54.26%), Postives = 68/94 (72.34%), Query Frame = 2
Query:  116 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            M S  SQ+E+DYL+K++LIGDSGVGKS LL  FT + F  E   TIGV+F  + +   GK +K  +WDTAGQER++ +TS+YYRGA G ++ YD
Sbjct:    1 MTSKGSQEEYDYLYKIVLIGDSGVGKSNLLSRFTRNEFSLETKSTIGVEFATRTIQTEGKTIKAQVWDTAGQERYRAITSAYYRGAVGALLVYD 94          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB18_CAEEL (Ras-related protein Rab-18 OS=Caenorhabditis elegans GN=rab-18 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.798e-23
Identity = 50/80 (62.50%), Postives = 65/80 (81.25%), Query Frame = 2
Query:  158 KLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            K+L+IG+SGVGKS+L+L F  D F+ E + TIGVDF++  + + G ++KLAIWDTAGQERF+TLT SYYRGAQG+I  YD
Sbjct:   13 KILIIGESGVGKSSLMLRFVDDVFDPEQAATIGVDFRVTSMAIDGNRVKLAIWDTAGQERFRTLTPSYYRGAQGVICVYD 92          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.960e-23
Identity = 50/88 (56.82%), Postives = 66/88 (75.00%), Query Frame = 2
Query:  134 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            + E+DYLFK +LIGDSGVGKS LL+ FT + F  E   TIGV+F  +++ L  KK+K  IWDTAGQER++ +TS+YYRGA G ++ YD
Sbjct:    4 EDEYDYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYD 91          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB3_CAEEL (Ras-related protein Rab-3 OS=Caenorhabditis elegans GN=rab-3 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.478e-23
Identity = 48/87 (55.17%), Postives = 66/87 (75.86%), Query Frame = 2
Query:  137 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            Q FDY+FKLL+IG+S VGK++ L  +  D+F      T+G+DFK+K V  G K++KL IWDTAGQER++T+T++YYRGA G I+ YD
Sbjct:   17 QNFDYMFKLLIIGNSSVGKTSFLFRYCDDSFTSAFVSTVGIDFKVKTVFRGDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYD 103          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB3C_RAT (Ras-related protein Rab-3C OS=Rattus norvegicus GN=Rab3c PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.478e-23
Identity = 48/90 (53.33%), Postives = 67/90 (74.44%), Query Frame = 2
Query:  128 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            +S Q FDY+FKLL+IG+S VGK++ L  +  D+F      T+G+DFK+K V    K++KL IWDTAGQER++T+T++YYRGA G I+ YD
Sbjct:   22 SSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYD 111          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB3C_MOUSE (Ras-related protein Rab-3C OS=Mus musculus GN=Rab3c PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.478e-23
Identity = 48/90 (53.33%), Postives = 67/90 (74.44%), Query Frame = 2
Query:  128 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            +S Q FDY+FKLL+IG+S VGK++ L  +  D+F      T+G+DFK+K V    K++KL IWDTAGQER++T+T++YYRGA G I+ YD
Sbjct:   22 SSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYD 111          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB3C_HUMAN (Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3C PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.478e-23
Identity = 48/90 (53.33%), Postives = 67/90 (74.44%), Query Frame = 2
Query:  128 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            +S Q FDY+FKLL+IG+S VGK++ L  +  D+F      T+G+DFK+K V    K++KL IWDTAGQER++T+T++YYRGA G I+ YD
Sbjct:   22 SSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYD 111          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB3C_BOVIN (Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C PE=2 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 6.478e-23
Identity = 48/90 (53.33%), Postives = 67/90 (74.44%), Query Frame = 2
Query:  128 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            +S Q FDY+FKLL+IG+S VGK++ L  +  D+F      T+G+DFK+K V    K++KL IWDTAGQER++T+T++YYRGA G I+ YD
Sbjct:   22 SSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYD 111          
The following BLAST results are available for this feature:
BLAST of CF504169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 370
Match NameE-valueIdentityDescription
RAB18_CAEBR9.995e-2463.75Ras-related protein Rab-18 OS=Caenorhabditis brigg... [more]
RB11E_LOTJA2.227e-2356.38Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
RB11A_DICDI2.227e-2354.26Ras-related protein Rab-11A OS=Dictyostelium disco... [more]
RAB18_CAEEL3.798e-2362.50Ras-related protein Rab-18 OS=Caenorhabditis elega... [more]
YPT3_SCHPO4.960e-2356.82GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]
RAB3_CAEEL6.478e-2355.17Ras-related protein Rab-3 OS=Caenorhabditis elegan... [more]
RAB3C_RAT6.478e-2353.33Ras-related protein Rab-3C OS=Rattus norvegicus GN... [more]
RAB3C_MOUSE6.478e-2353.33Ras-related protein Rab-3C OS=Mus musculus GN=Rab3... [more]
RAB3C_HUMAN6.478e-2353.33Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3... [more]
RAB3C_BOVIN6.478e-2353.33Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-657 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504169 ID=CF504169; Name=CF504169; organism=Citrus sinensis; type=EST; length=394bp
ATTTGCTTTTCCTGTTTTTTGCCTTCACATTGCTTAACATTTTATCAAAA
CATCAGCTTCGGATCCAAAGCCATCAGCTTGAACCCAAAAGTCTTCGTTT
TTATTTGTTTGTTTGATGGCTTCTTCAACGAGTCAGCAGGAGTTCGATTA
CTTGTTTAAGTTGCTGTTAATTGGAGATTCTGGGGTTGGCAAGAGTACTT
TGCTATTGAGTTTCACTTCTGATACCTTTGAGGAGCTCTCTCCTACCATT
GGTGTGGATTTTAAGATAAAGCATGTTACTCTTGGTGGTAAAAAATTGAA
GCTTGCCATTTGGGACACGGCTGGGCAGGAAAGATTTAAAACACTAACTA
GTTCCTATTACAGGGGAGCCCAAGGGATAATCATGGGTTATGAT
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