CF504169

Overview
NameCF504169
Unique NameCF504169
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length394
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.478e-23
Identity = 53/94 (56.38%), Postives = 67/94 (71.28%), Query Frame = 2
Query:  116 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            MA   + +E+DYLFKL+LIGDSGVGKS LL  FT + F  E   TIGV+F  K   + GK +K  IWDTAGQER++ +TS+YYRGA G ++ YD
Sbjct:    1 MAGYRADEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLIYD 94          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.461e-23
Identity = 52/94 (55.32%), Postives = 66/94 (70.21%), Query Frame = 2
Query:  116 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            MA   +  E+DYLFKL+LIGDSGVGKS LL  FT + F  E   TIGV+F  K + +  K +K  IWDTAGQER++ +TS+YYRGA G ++ YD
Sbjct:    1 MAGYRADDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 94          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB3B_RAT (Ras-related protein Rab-3B OS=Rattus norvegicus GN=Rab3b PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 8.461e-23
Identity = 49/89 (55.06%), Postives = 66/89 (74.16%), Query Frame = 2
Query:  131 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            S Q FDY+FKLL+IG+S VGK++ L  +  DTF      T+G+DFK+K V    K++KL IWDTAGQER++T+T++YYRGA G I+ YD
Sbjct:   15 SDQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYD 103          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB3B_MOUSE (Ras-related protein Rab-3B OS=Mus musculus GN=Rab3b PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.461e-23
Identity = 49/89 (55.06%), Postives = 66/89 (74.16%), Query Frame = 2
Query:  131 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            S Q FDY+FKLL+IG+S VGK++ L  +  DTF      T+G+DFK+K V    K++KL IWDTAGQER++T+T++YYRGA G I+ YD
Sbjct:   15 SDQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYD 103          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB3B_MESAU (Ras-related protein Rab-3B OS=Mesocricetus auratus GN=RAB3B PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.461e-23
Identity = 49/89 (55.06%), Postives = 66/89 (74.16%), Query Frame = 2
Query:  131 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            S Q FDY+FKLL+IG+S VGK++ L  +  DTF      T+G+DFK+K V    K++KL IWDTAGQER++T+T++YYRGA G I+ YD
Sbjct:   15 SDQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYD 103          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB3B_HUMAN (Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3B PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 8.461e-23
Identity = 49/89 (55.06%), Postives = 66/89 (74.16%), Query Frame = 2
Query:  131 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            S Q FDY+FKLL+IG+S VGK++ L  +  DTF      T+G+DFK+K V    K++KL IWDTAGQER++T+T++YYRGA G I+ YD
Sbjct:   15 SDQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYD 103          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB3B_BOVIN (Ras-related protein Rab-3B OS=Bos taurus GN=RAB3B PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.461e-23
Identity = 49/89 (55.06%), Postives = 66/89 (74.16%), Query Frame = 2
Query:  131 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            S Q FDY+FKLL+IG+S VGK++ L  +  DTF      T+G+DFK+K V    K++KL IWDTAGQER++T+T++YYRGA G I+ YD
Sbjct:   15 SDQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYD 103          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB3A_RAT (Ras-related protein Rab-3A OS=Rattus norvegicus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.443e-22
Identity = 46/90 (51.11%), Postives = 67/90 (74.44%), Query Frame = 2
Query:  128 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            +S Q FDY+FK+L+IG+S VGK++ L  +  D+F      T+G+DFK+K +    K++KL IWDTAGQER++T+T++YYRGA G I+ YD
Sbjct:   14 SSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYD 103          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB3A_PIG (Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.443e-22
Identity = 46/90 (51.11%), Postives = 67/90 (74.44%), Query Frame = 2
Query:  128 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            +S Q FDY+FK+L+IG+S VGK++ L  +  D+F      T+G+DFK+K +    K++KL IWDTAGQER++T+T++YYRGA G I+ YD
Sbjct:   14 SSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYD 103          
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB3A_MOUSE (Ras-related protein Rab-3A OS=Mus musculus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.443e-22
Identity = 46/90 (51.11%), Postives = 67/90 (74.44%), Query Frame = 2
Query:  128 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            +S Q FDY+FK+L+IG+S VGK++ L  +  D+F      T+G+DFK+K +    K++KL IWDTAGQER++T+T++YYRGA G I+ YD
Sbjct:   14 SSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYD 103          
The following BLAST results are available for this feature:
BLAST of CF504169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 370
Match NameE-valueIdentityDescription
RAA1A_ARATH6.478e-2356.38Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]
YPT3_NICPL8.461e-2355.32Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]
RAB3B_RAT8.461e-2355.06Ras-related protein Rab-3B OS=Rattus norvegicus GN... [more]
RAB3B_MOUSE8.461e-2355.06Ras-related protein Rab-3B OS=Mus musculus GN=Rab3... [more]
RAB3B_MESAU8.461e-2355.06Ras-related protein Rab-3B OS=Mesocricetus auratus... [more]
RAB3B_HUMAN8.461e-2355.06Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3... [more]
RAB3B_BOVIN8.461e-2355.06Ras-related protein Rab-3B OS=Bos taurus GN=RAB3B ... [more]
RAB3A_RAT1.443e-2251.11Ras-related protein Rab-3A OS=Rattus norvegicus GN... [more]
RAB3A_PIG1.443e-2251.11Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A ... [more]
RAB3A_MOUSE1.443e-2251.11Ras-related protein Rab-3A OS=Mus musculus GN=Rab3... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-657 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504169 ID=CF504169; Name=CF504169; organism=Citrus sinensis; type=EST; length=394bp
ATTTGCTTTTCCTGTTTTTTGCCTTCACATTGCTTAACATTTTATCAAAA
CATCAGCTTCGGATCCAAAGCCATCAGCTTGAACCCAAAAGTCTTCGTTT
TTATTTGTTTGTTTGATGGCTTCTTCAACGAGTCAGCAGGAGTTCGATTA
CTTGTTTAAGTTGCTGTTAATTGGAGATTCTGGGGTTGGCAAGAGTACTT
TGCTATTGAGTTTCACTTCTGATACCTTTGAGGAGCTCTCTCCTACCATT
GGTGTGGATTTTAAGATAAAGCATGTTACTCTTGGTGGTAAAAAATTGAA
GCTTGCCATTTGGGACACGGCTGGGCAGGAAAGATTTAAAACACTAACTA
GTTCCTATTACAGGGGAGCCCAAGGGATAATCATGGGTTATGAT
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