CF504176

Overview
NameCF504176
Unique NameCF504176
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length414
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504176 vs. ExPASy Swiss-Prot
Match: Y325_THEMA (Uncharacterized oxidoreductase TM_0325 OS=Thermotoga maritima GN=TM_0325 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 2.621e-12
Identity = 41/109 (37.61%), Postives = 64/109 (58.72%), Query Frame = 3
Query:   90 AKVFAQQGAKVVIADIQEQLGHSVVESIGT--SNSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVM 410
            A +FA++GAKV I DI E+ G   VE I +    ++++  DV  ++  +  + +TV T G+LDI+ NNAGI       I +  + DF++ ++VNV G FL  K+A   M
Sbjct:   22 AVMFAERGAKVAINDISEEKGKETVELIKSMGGEAAFIFGDVAKDA--EQIVKKTVETFGRLDILVNNAGI--VPYGNIEETSEEDFDKTMAVNVKGPFLLSKYAVEQM 126          

HSP 2 Score: 24.6386 bits (52), Expect = 2.621e-12
Identity = 10/15 (66.67%), Postives = 11/15 (73.33%), Query Frame = 2
Query:   35 EGKVAFITGGASGIG 79
            +GKV  ITG  SGIG
Sbjct:    4 QGKVVLITGAGSGIG 18          
BLAST of CF504176 vs. ExPASy Swiss-Prot
Match: FABG_THEMA (3-oxoacyl-[acyl-carrier-protein] reductase OS=Thermotoga maritima GN=fabG PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.257e-11
Identity = 33/102 (32.35%), Postives = 59/102 (57.84%), Query Frame = 3
Query:   84 APAKVFAQQGAKVVIADIQEQLGHSVV---ESIGTSNSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVF 380
            A   +FAQ+GA V+  DI ++   S+V   E +      YV  +VT+   IK  +++ V  +G++D++ NNAGI       ++  ++ D++ V++VN+ GVF
Sbjct:   20 ATTLLFAQEGATVIAGDISKENLDSLVKEAEGLPGKVDPYV-LNVTDRDQIKEVVEKVVQKYGRIDVLVNNAGI--TRDALLVRMKEEDWDAVINVNLKGVF 118          

HSP 2 Score: 32.3426 bits (72), Expect = 1.257e-11
Identity = 15/20 (75.00%), Postives = 15/20 (75.00%), Query Frame = 2
Query:   29 RLEGKVAFITGGASGIGACT 88
            RLEGKV  ITG ASGIG  T
Sbjct:    2 RLEGKVCLITGAASGIGKAT 21          
BLAST of CF504176 vs. ExPASy Swiss-Prot
Match: HCD2_RAT (3-hydroxyacyl-CoA dehydrogenase type-2 OS=Rattus norvegicus GN=Hsd17b10 PE=1 SV=3)

HSP 1 Score: 52.7582 bits (125), Expect = 2.116e-11
Identity = 35/111 (31.53%), Postives = 55/111 (49.55%), Query Frame = 3
Query:   90 AKVFAQQGAKVVIADIQEQLGHSVVESIGTSNSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKA----DFERVLSVNVTGVFLGIKHAARVM 410
            AK    QGA  V+ D+    G +  + +G  N  +   +VT+E  ++ A+       G++D+  N AGI  A KT      +     DF+RV++VN+ G F  I+  A VM
Sbjct:   27 AKRLVGQGATAVLLDVPNSEGETEAKKLG-GNCIFAPANVTSEKEVQAALTLAKEKFGRIDVAVNCAGIAVAIKTYHEKKNQVHTLEDFQRVINVNLIGTFNVIRLVAGVM 136          

HSP 2 Score: 35.039 bits (79), Expect = 2.116e-11
Identity = 17/34 (50.00%), Postives = 22/34 (64.71%), Query Frame = 2
Query:   11 LSAITRRLEGKVAFITGGASGIGACTCKSLCPTG 112
            ++A  R ++G VA ITGGASG+G  T K L   G
Sbjct:    1 MAAAVRSVKGLVAVITGGASGLGLSTAKRLVGQG 34          
BLAST of CF504176 vs. ExPASy Swiss-Prot
Match: Y019_THEMA (Uncharacterized oxidoreductase TM_0019 OS=Thermotoga maritima GN=TM_0019 PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.366e-11
Identity = 38/112 (33.93%), Postives = 66/112 (58.93%), Query Frame = 3
Query:   84 APAKVFAQQGAKVVIADIQEQLGHSVVESIGTS--NSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMI 413
            A A++FA+ G KVVIA+I E+ G    E +     + ++V  DV +E+ +KN + +TV  +G +D++ NNA +       I +    ++ERV+ VN+TG ++  ++ A  MI
Sbjct:   19 AIAQLFAENGMKVVIAEIDEEAGVEREEMLRERGLDVTFVKTDVADENSVKNMVRKTVEIYGGVDVLVNNAAVMSVKS--IFERPLEEWERVIRVNLTGPYICSRYCAEEMI 128          
BLAST of CF504176 vs. ExPASy Swiss-Prot
Match: LINC_PSEPA (2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase OS=Pseudomonas paucimobilis GN=linC PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.498e-11
Identity = 38/110 (34.55%), Postives = 58/110 (52.73%), Query Frame = 3
Query:   84 APAKVFAQQGAKVVIADIQEQLGHSVVESIGTSNSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMI 413
            A  ++    GA V +ADI ++ G +VV + G   ++Y  CD+  E  +K  + QT+A  G LD  FNNA I  A    + +     F + + +NVTG FL +K+    MI
Sbjct:   21 ATVELLVASGANVPVADINDEAGEAVVATSG-GKAAYFRCDIAQEEDVKALVAQTLAAFGGLDGSFNNAAIPQAG-LPLAEVSLERFRQSMDINVTGTFLCMKYQILAMI 128          
BLAST of CF504176 vs. ExPASy Swiss-Prot
Match: 3BHD_COMTE (3-beta-hydroxysteroid dehydrogenase OS=Comamonas testosteroni PE=1 SV=5)

HSP 1 Score: 49.2914 bits (116), Expect = 7.806e-11
Identity = 33/109 (30.28%), Postives = 51/109 (46.79%), Query Frame = 3
Query:   93 KVFAQQGAKVVIADIQEQLGHSVVESIGTSNSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGI---GGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVM 410
            K+   +GAKV  +DI E  G  +   +G   S +V  DV++E+     +       G L+++ NNAGI   G     R+      DF R+L +N   VF+G +     M
Sbjct:   25 KLLLGEGAKVAFSDINEAAGQQLAAELG-ERSMFVRHDVSSEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRL-----EDFSRLLKINTESVFIGCQQGIAAM 127          

HSP 2 Score: 36.5798 bits (83), Expect = 7.806e-11
Identity = 17/33 (51.52%), Postives = 22/33 (66.67%), Query Frame = 2
Query:   20 ITRRLEGKVAFITGGASGIGACTCKSLCPTGCQ 118
            +T RL+GKVA +TGGASG+G    K L   G +
Sbjct:    1 MTNRLQGKVALVTGGASGVGLEVVKLLLGEGAK 33          
The following BLAST results are available for this feature:
BLAST of CF504176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
Y325_THEMA2.621e-1237.61Uncharacterized oxidoreductase TM_0325 OS=Thermoto... [more]
FABG_THEMA1.257e-1132.353-oxoacyl-[acyl-carrier-protein] reductase OS=Ther... [more]
HCD2_RAT2.116e-1131.533-hydroxyacyl-CoA dehydrogenase type-2 OS=Rattus n... [more]
Y019_THEMA3.366e-1133.93Uncharacterized oxidoreductase TM_0019 OS=Thermoto... [more]
LINC_PSEPA7.498e-1134.552,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydroge... [more]
3BHD_COMTE7.806e-1130.283-beta-hydroxysteroid dehydrogenase OS=Comamonas t... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-664 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504176 ID=CF504176; Name=CF504176; organism=Citrus sinensis; type=EST; length=414bp
CTCAGGGGTTCTTTCTGCAATCACCAGAAGGCTAGAGGGCAAGGTAGCCT
TTATTACTGGAGGGGCTAGTGGAATTGGTGCATGCACCTGCAAAAGTCTT
TGCCCAACAGGGTGCCAAAGTTGTCATTGCGGATATTCAGGAACAATTAG
GCCATTCAGTTGTTGAATCCATAGGCACATCAAACTCATCCTATGTCCAT
TGCGATGTCACAAACGAATCCCACATTAAAAATGCAATCGACCAAACCGT
TGCAACTCATGGCAAGCTGGACATAATGTTCAACAACGCCGGCATAGGCG
GCGCTAACAAGACCCGCATAATCGACAATGAAAAGGCCGATTTCGAGCGT
GTCCTGAGTGTAAATGTCACCGGAGTTTTCTTGGGCATCAAGCATGCTGC
TCGTGTCATGATTC
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