CF504178

Overview
NameCF504178
Unique NameCF504178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length425
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig523 contig Csv1_Contig523:1..425. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504178 vs. ExPASy Swiss-Prot
Match: PLET2_ARATH (AP2-like ethylene-responsive transcription factor PLT2 OS=Arabidopsis thaliana GN=PLT2 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.807e-27
Identity = 59/131 (45.04%), Postives = 85/131 (64.89%), Query Frame = 1
Query:   61 YRGVTFYRRTGRWESHIWDS----------GKQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTL-HKCGRWEARMGQFLGKKYVYLG 420
            YRGVT +R TGR+E+H+WD+          G+QVYLGG+D             +K+ G     NF I +YE ++++M N+T++EFV  +RR+S+GF RG+S YRGVT  H+ GRW+AR+G+  G K +YLG
Sbjct:  191 YRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPSTTTNFPITNYEKEVEEMKNMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLG 321          
BLAST of CF504178 vs. ExPASy Swiss-Prot
Match: AIL7_ARATH (AP2-like ethylene-responsive transcription factor AIL7 OS=Arabidopsis thaliana GN=AIL7 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.807e-27
Identity = 59/131 (45.04%), Postives = 86/131 (65.65%), Query Frame = 1
Query:   61 YRGVTFYRRTGRWESHIWDS----------GKQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTL-HKCGRWEARMGQFLGKKYVYLG 420
            YRGVT +R TGR+E+H+WD+          G+QVYLGG+D             +K+ G+ A  NF +  Y  +L++M+++TK+EF+  LRR+S+GF RG+S YRGVT  H+ GRW+AR+G+  G K +YLG
Sbjct:  174 YRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEDRAARAYDLAALKYWGSTATTNFPVSSYSKELEEMNHMTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLG 304          
BLAST of CF504178 vs. ExPASy Swiss-Prot
Match: AP2L1_ARATH (AP2-like ethylene-responsive transcription factor At1g16060 OS=Arabidopsis thaliana GN=At1g16060 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.584e-27
Identity = 59/131 (45.04%), Postives = 84/131 (64.12%), Query Frame = 1
Query:   61 YRGVTFYRRTGRWESHIWDS----------GKQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTL-HKCGRWEARMGQFLGKKYVYLG 420
            +RGVT +R TGR+E+H+WD           G+QVYLG +D             +K+ G +  +NF + +YE+D+K+M + +KEE++  LRR+S+GF RG SKYRGV   H  GRWEAR+G+  G KY+YLG
Sbjct:   59 HRGVTRHRWTGRYEAHLWDKNSWNETQTKKGRQVYLGAYDEEDAAARAYDLAALKYWGRDTILNFPLCNYEEDIKEMESQSKEEYIGSLRRKSSGFSRGVSKYRGVAKHHHNGRWEARIGRVFGNKYLYLG 189          
BLAST of CF504178 vs. ExPASy Swiss-Prot
Match: PLET1_ARATH (AP2-like ethylene-responsive transcription factor PLT1 OS=Arabidopsis thaliana GN=PLT1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.294e-26
Identity = 58/131 (44.27%), Postives = 85/131 (64.89%), Query Frame = 1
Query:   61 YRGVTFYRRTGRWESHIWDS----------GKQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTL-HKCGRWEARMGQFLGKKYVYLG 420
            YRGVT +R TGR+E+H+WD+          G+QVYLGG+D             +K+ G     NF I +YE ++++M ++T++EFV  +RR+S+GF RG+S YRGVT  H+ GRW+AR+G+  G K +YLG
Sbjct:  182 YRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARSYDLAALKYWGPSTTTNFPITNYEKEVEEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLG 312          
BLAST of CF504178 vs. ExPASy Swiss-Prot
Match: BBM_ARATH (AP2-like ethylene-responsive transcription factor BBM OS=Arabidopsis thaliana GN=BBM PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 4.916e-26
Identity = 57/131 (43.51%), Postives = 85/131 (64.89%), Query Frame = 1
Query:   61 YRGVTFYRRTGRWESHIWDS----------GKQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTL-HKCGRWEARMGQFLGKKYVYLG 420
            YRGVT +R TGR+E+H+WD+          G+QVYLGG+D             +K+ G     NF + +YE ++++M ++T++E+V  LRR+S+GF RG+S YRGVT  H+ GRW+AR+G+  G K +YLG
Sbjct:  211 YRGVTRHRWTGRYEAHLWDNSCKREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFPLSEYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLG 341          
BLAST of CF504178 vs. ExPASy Swiss-Prot
Match: BBM2_BRANA (AP2-like ethylene-responsive transcription factor BBM2 OS=Brassica napus GN=BBM2 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.916e-26
Identity = 57/131 (43.51%), Postives = 85/131 (64.89%), Query Frame = 1
Query:   61 YRGVTFYRRTGRWESHIWDS----------GKQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTL-HKCGRWEARMGQFLGKKYVYLG 420
            YRGVT +R TGR+E+H+WD+          G+QVYLGG+D             +K+ G     NF + +YE ++++M ++T++E+V  LRR+S+GF RG+S YRGVT  H+ GRW+AR+G+  G K +YLG
Sbjct:  211 YRGVTRHRWTGRYEAHLWDNSCKREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFPMSEYEKEIEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLG 341          
BLAST of CF504178 vs. ExPASy Swiss-Prot
Match: BBM1_BRANA (AP2-like ethylene-responsive transcription factor BBM1 OS=Brassica napus GN=BBM1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.420e-26
Identity = 57/131 (43.51%), Postives = 85/131 (64.89%), Query Frame = 1
Query:   61 YRGVTFYRRTGRWESHIWDS----------GKQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTL-HKCGRWEARMGQFLGKKYVYLG 420
            YRGVT +R TGR+E+H+WD+          G+QVYLGG+D             +K+ G     NF + +YE ++++M ++T++E+V  LRR+S+GF RG+S YRGVT  H+ GRW+AR+G+  G K +YLG
Sbjct:  211 YRGVTRHRWTGRYEAHLWDNSCKREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFPMSEYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLG 341          
BLAST of CF504178 vs. ExPASy Swiss-Prot
Match: AP2L3_ARATH (AP2-like ethylene-responsive transcription factor At1g79700 OS=Arabidopsis thaliana GN=At1g79700 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.644e-23
Identity = 53/121 (43.80%), Postives = 75/121 (61.98%), Query Frame = 1
Query:   61 YRGVTFYRRTGRWESHIWDS----------GKQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTL-HKCGRWEARMGQ 390
            YRGVT +R TGR+E+H+WD           G+QVYLG +D             +K+ G +  +NF +  Y++D+K+M   +KEE++  LRR+S+GF RG SKYRGV   H  GRWEAR+G+
Sbjct:   53 YRGVTRHRWTGRYEAHLWDKNSWNDTQTKKGRQVYLGAYDEEEAAARAYDLAALKYWGRDTLLNFPLPSYDEDVKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGR 173          
BLAST of CF504178 vs. ExPASy Swiss-Prot
Match: AIL6_ARATH (AP2-like ethylene-responsive transcription factor AIL6 OS=Arabidopsis thaliana GN=AIL6 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.644e-23
Identity = 54/128 (42.19%), Postives = 81/128 (63.28%), Query Frame = 1
Query:   61 YRGVTFYRRTGRWESHIWDSG-------KQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTL-HKCGRWEARMGQFLGKKYVYLG 420
            YRGVT +R TGR+E+H+WD+        ++   GG+D             +K+  A A  NF I +Y  ++++M ++TK+EF+  LRR+S+GF RG+S YRGVT  H+ GRW+AR+G+  G K +YLG
Sbjct:  269 YRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGGYDKEDKAARAYDLAALKYWNATATTNFPITNYSKEVEEMKHMTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLG 396          
BLAST of CF504178 vs. ExPASy Swiss-Prot
Match: AP2L4_ARATH (AP2-like ethylene-responsive transcription factor At2g41710 OS=Arabidopsis thaliana GN=At2g41710 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 5.820e-19
Identity = 52/131 (39.69%), Postives = 73/131 (55.73%), Query Frame = 1
Query:   61 YRGVTFYRRTGRWESHIWDS----------GKQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLR-----RQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKY 408
            YRGVT +R TGR+E+H+WD           GKQVYLG +D             +K+ G    INF + DY  DL++M NL++EE++  LR     R+S+GF RG +KYRG+      RW+A   +  G +Y
Sbjct:   71 YRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNLSREEYLASLRRYPFGRKSSGFSRGIAKYRGLQ----SRWDASASRMPGPEY 197          
The following BLAST results are available for this feature:
BLAST of CF504178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
PLET2_ARATH5.807e-2745.04AP2-like ethylene-responsive transcription factor ... [more]
AIL7_ARATH5.807e-2745.04AP2-like ethylene-responsive transcription factor ... [more]
AP2L1_ARATH7.584e-2745.04AP2-like ethylene-responsive transcription factor ... [more]
PLET1_ARATH1.294e-2644.27AP2-like ethylene-responsive transcription factor ... [more]
BBM_ARATH4.916e-2643.51AP2-like ethylene-responsive transcription factor ... [more]
BBM2_BRANA4.916e-2643.51AP2-like ethylene-responsive transcription factor ... [more]
BBM1_BRANA6.420e-2643.51AP2-like ethylene-responsive transcription factor ... [more]
AP2L3_ARATH6.644e-2343.80AP2-like ethylene-responsive transcription factor ... [more]
AIL6_ARATH6.644e-2342.19AP2-like ethylene-responsive transcription factor ... [more]
AP2L4_ARATH5.820e-1939.69AP2-like ethylene-responsive transcription factor ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-666 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504178 ID=CF504178; Name=CF504178; organism=Citrus sinensis; type=EST; length=425bp
ATTGAAGCTCCTCAGCCCCTGAAAAAAAGCAGGCGTGGACCCAGGTCAAG
GAGTTCCCAGTATAGAGGTGTCACCTTTTACAGAAGAACTGGAAGATGGG
AATCTCATATATGGGATTCTGGGAAACAAGTTTATCTAGGTGGATTTGAC
ACTGCACATGCAGCTGCTCGTGCTTATGATAGGGCAGCTATCAAGTTCCG
GGGAGCGGAGGCAGACATAAACTTTAGTATAGAAGATTATGAGGATGACT
TGAAACAGATGAGCAACTTAACCAAGGAAGAGTTTGTACATGTACTTCGC
CGACAAAGCACCGGTTTCCCCAGAGGAAGCTCCAAATATAGAGGAGTTAC
TTTGCACAAATGTGGAAGATGGGAAGCTCGAATGGGCCAATTTTTAGGCA
AAAAGTACGTTTATTTGGGCTTGTT
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