CF504195

Overview
NameCF504195
Unique NameCF504195
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length407
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1260 contig Csv1_Contig1260:424..830. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504195 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.068e-12
Identity = 32/68 (47.06%), Postives = 42/68 (61.76%), Query Frame = 2 
Query:  203 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 406
            PDRP +        P +L G  PGD+G+D  GL +DPE+   N + E++HSRWAMLGA G   PE L+
Sbjct:   63 PDRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLT 128
The following BLAST results are available for this feature:
BLAST of CF504195 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
CB12_PETHY3.068e-1247.06Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-683 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504195 ID=CF504195; Name=CF504195; organism=Citrus sinensis; type=EST; length=407bp
GCGAAAAGAAGCTTCAGCAACAAAAGGAAAAGCTTTCGCATAAGAACATA
TGGCAACCTCTGCTATCCAACAATCAGCATTTGCTGGCCAGACCGCCTTG
AGGCAATCCAATGAGTTTGTCCGCAAGGTTGGAGTTGCTGACGGTGGCCG
TATCACCATGAGGAGGACTGTCAAATCCACTCCCCAGAGCATCTGGTACG
GCCCAGACCGCCCAAAGTACTTGGGACCATTCTCTGAGCAAACACCATCA
TACTTGACTGGTGAGTTCCCTGGTGACTATGGCTGGGATACCGCTGGTTT
ATCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAGCTAGAGGTGATCC
ACAGCAGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCTTCCCTGAAATC
CTCTCCA
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