CF504202

Overview
NameCF504202
Unique NameCF504202
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length162
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504202 vs. ExPASy Swiss-Prot
Match: RL10_MAIZE (60S ribosomal protein L10 OS=Zea mays GN=RPL10 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.371e-18
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 3
Query:   36 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKG 161
            MGRRPARCYRQIKNKP PKSR+CRGVPDPKIRIYDVGMK+KG
Sbjct:    1 MGRRPARCYRQIKNKPCPKSRYCRGVPDPKIRIYDVGMKRKG 42          
BLAST of CF504202 vs. ExPASy Swiss-Prot
Match: RL10_PINTA (60S ribosomal protein L10 OS=Pinus taeda GN=RPL10 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.129e-17
Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 3
Query:   36 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKK 158
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRI+DVG KK+
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGAKKR 41          
BLAST of CF504202 vs. ExPASy Swiss-Prot
Match: RL10_DROME (60S ribosomal protein L10 OS=Drosophila melanogaster GN=Qm PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.328e-15
Identity = 35/40 (87.50%), Postives = 37/40 (92.50%), Query Frame = 3
Query:   36 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKK 155
            MGRRPARCYR  KNKPYPKSRFCRGVPDPKIRI+D+G KK
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKK 40          
BLAST of CF504202 vs. ExPASy Swiss-Prot
Match: RL10_BOMMA (60S ribosomal protein L10 OS=Bombyx mandarina GN=RpL10 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.959e-15
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 3
Query:   36 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKK 155
            MGRRPARCYR  KNKPYPKSRFCRGVPDPKIRI+D+G K+
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKR 40          
BLAST of CF504202 vs. ExPASy Swiss-Prot
Match: RL10_CAEEL (60S ribosomal protein L10 OS=Caenorhabditis elegans GN=rpl-10 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.610e-15
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 3
Query:   36 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKK 155
            MGRRPARCYR IKNKPYPKSRFCRGVPD KIRI+D+G K+
Sbjct:    1 MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKR 40          
BLAST of CF504202 vs. ExPASy Swiss-Prot
Match: RL10_SHEEP (60S ribosomal protein L10 OS=Ovis aries GN=RPL10 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.125e-14
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 3
Query:   36 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKK 155
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKK 40          
BLAST of CF504202 vs. ExPASy Swiss-Prot
Match: RL10_RAT (60S ribosomal protein L10 OS=Rattus norvegicus GN=Rpl10 PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 1.125e-14
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 3
Query:   36 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKK 155
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKK 40          
BLAST of CF504202 vs. ExPASy Swiss-Prot
Match: RL10_PONAB (60S ribosomal protein L10 OS=Pongo abelii GN=RPL10 PE=2 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 1.125e-14
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 3
Query:   36 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKK 155
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKK 40          
BLAST of CF504202 vs. ExPASy Swiss-Prot
Match: RL10_PIG (60S ribosomal protein L10 OS=Sus scrofa GN=RPL10 PE=2 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 1.125e-14
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 3
Query:   36 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKK 155
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKK 40          
BLAST of CF504202 vs. ExPASy Swiss-Prot
Match: RL10_PAPAN (60S ribosomal protein L10 OS=Papio anubis GN=RPL10 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.125e-14
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 3
Query:   36 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKK 155
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKK 40          
The following BLAST results are available for this feature:
BLAST of CF504202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RL10_MAIZE6.371e-1892.8660S ribosomal protein L10 OS=Zea mays GN=RPL10 PE=... [more]
RL10_PINTA4.129e-1790.2460S ribosomal protein L10 OS=Pinus taeda GN=RPL10 ... [more]
RL10_DROME1.328e-1587.5060S ribosomal protein L10 OS=Drosophila melanogast... [more]
RL10_BOMMA2.959e-1585.0060S ribosomal protein L10 OS=Bombyx mandarina GN=R... [more]
RL10_CAEEL8.610e-1585.0060S ribosomal protein L10 OS=Caenorhabditis elegan... [more]
RL10_SHEEP1.125e-1485.0060S ribosomal protein L10 OS=Ovis aries GN=RPL10 P... [more]
RL10_RAT1.125e-1485.0060S ribosomal protein L10 OS=Rattus norvegicus GN=... [more]
RL10_PONAB1.125e-1485.0060S ribosomal protein L10 OS=Pongo abelii GN=RPL10... [more]
RL10_PIG1.125e-1485.0060S ribosomal protein L10 OS=Sus scrofa GN=RPL10 P... [more]
RL10_PAPAN1.125e-1485.0060S ribosomal protein L10 OS=Papio anubis GN=RPL10... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-690 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-15_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504202 ID=CF504202; Name=CF504202; organism=Citrus sinensis; type=EST; length=162bp
GAGAGAATAGCTGAGACCGAACACGAACGCTCGCCATGGGAAGAAGACCG
GCAAGGTGTTACCGCCAAATCAAGAACAAACCCTACCCAAAGTCCCGCTT
TTGCCGCGGTGTCCCCGATCCCAAGATCAGAATCTACGATGTCGGGATGA
AGAAGAAAGGCA
back to top