CF504204

Overview
NameCF504204
Unique NameCF504204
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length213
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1234 contig Csv1_Contig1234:166..378. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504204 vs. ExPASy Swiss-Prot
Match: METK2_SUASA (S-adenosylmethionine synthetase 2 OS=Suaeda salsa GN=METK2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.118e-17
Identity = 39/43 (90.70%), Postives = 42/43 (97.67%), Query Frame = 2
Query:   83 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACE 211
            ME+FLFTSESVNEGHPDKLCDQ+SDAVLDACL QDP+SKVACE
Sbjct:    1 MESFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACE 43          
BLAST of CF504204 vs. ExPASy Swiss-Prot
Match: METK4_HORVU (S-adenosylmethionine synthetase 4 OS=Hordeum vulgare GN=SAM4 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.072e-17
Identity = 39/44 (88.64%), Postives = 43/44 (97.73%), Query Frame = 2
Query:   80 KMETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACE 211
            ++ETFLFTSESVNEGHPDKLCDQISDAVLDACL +DP+SKVACE
Sbjct:    3 EVETFLFTSESVNEGHPDKLCDQISDAVLDACLAEDPDSKVACE 46          
BLAST of CF504204 vs. ExPASy Swiss-Prot
Match: METK3_ORYSJ (S-adenosylmethionine synthetase 3 OS=Oryza sativa subsp. japonica GN=METK3 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.072e-17
Identity = 39/44 (88.64%), Postives = 43/44 (97.73%), Query Frame = 2
Query:   80 KMETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACE 211
            +++TFLFTSESVNEGHPDKLCDQISDAVLDACL +DPESKVACE
Sbjct:    3 EVDTFLFTSESVNEGHPDKLCDQISDAVLDACLAEDPESKVACE 46          
BLAST of CF504204 vs. ExPASy Swiss-Prot
Match: METK2_ORYSJ (S-adenosylmethionine synthetase 2 OS=Oryza sativa subsp. japonica GN=SAM2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.072e-17
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 2
Query:   86 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACE 211
            ETFLFTSESVNEGHPDKLCDQ+SDAVLDACL QDP+SKVACE
Sbjct:    4 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACE 45          
BLAST of CF504204 vs. ExPASy Swiss-Prot
Match: METK2_HORVU (S-adenosylmethionine synthetase 2 OS=Hordeum vulgare GN=SAM2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.072e-17
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 2
Query:   86 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACE 211
            ETFLFTSESVNEGHPDKLCDQ+SDAVLDACL QDP+SKVACE
Sbjct:    4 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACE 45          
BLAST of CF504204 vs. ExPASy Swiss-Prot
Match: METK2_DAUCA (S-adenosylmethionine synthetase 2 OS=Daucus carota GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.072e-17
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 2
Query:   83 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACE 211
            M+TFL TSESVNEGHPDKLCDQISDAVLDACLEQDP+SKVACE
Sbjct:    1 MDTFLNTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACE 43          
BLAST of CF504204 vs. ExPASy Swiss-Prot
Match: METK1_HORVU (S-adenosylmethionine synthetase 1 OS=Hordeum vulgare GN=SAM1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.072e-17
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 2
Query:   86 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACE 211
            ETFLFTSESVNEGHPDKLCDQ+SDAVLDACL QDP+SKVACE
Sbjct:    4 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACE 45          
BLAST of CF504204 vs. ExPASy Swiss-Prot
Match: METK1_BETVU (S-adenosylmethionine synthetase 1 OS=Beta vulgaris GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.072e-17
Identity = 39/43 (90.70%), Postives = 42/43 (97.67%), Query Frame = 2
Query:   83 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACE 211
            ++TFLFTSESVNEGHPDK+CDQISDAVLDACL QDPESKVACE
Sbjct:    5 IDTFLFTSESVNEGHPDKMCDQISDAVLDACLAQDPESKVACE 47          
BLAST of CF504204 vs. ExPASy Swiss-Prot
Match: METK_CHLRE (S-adenosylmethionine synthetase OS=Chlamydomonas reinhardtii GN=METM PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.318e-17
Identity = 37/43 (86.05%), Postives = 43/43 (100.00%), Query Frame = 2
Query:   83 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACE 211
            +E+FL+TSESVNEGHPDK+CDQ+SDAVLDACLEQDP+SKVACE
Sbjct:    4 LESFLYTSESVNEGHPDKICDQVSDAVLDACLEQDPDSKVACE 46          
BLAST of CF504204 vs. ExPASy Swiss-Prot
Match: METK_MESCR (S-adenosylmethionine synthetase OS=Mesembryanthemum crystallinum GN=METK PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.946e-17
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = 2
Query:   83 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACE 211
            M+TFLFTSESVNEGHPDKLCDQISDAVLDACL QD ESKVACE
Sbjct:    1 MDTFLFTSESVNEGHPDKLCDQISDAVLDACLAQDAESKVACE 43          
The following BLAST results are available for this feature:
BLAST of CF504204 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
METK2_SUASA3.118e-1790.70S-adenosylmethionine synthetase 2 OS=Suaeda salsa ... [more]
METK4_HORVU4.072e-1788.64S-adenosylmethionine synthetase 4 OS=Hordeum vulga... [more]
METK3_ORYSJ4.072e-1788.64S-adenosylmethionine synthetase 3 OS=Oryza sativa ... [more]
METK2_ORYSJ4.072e-1792.86S-adenosylmethionine synthetase 2 OS=Oryza sativa ... [more]
METK2_HORVU4.072e-1792.86S-adenosylmethionine synthetase 2 OS=Hordeum vulga... [more]
METK2_DAUCA4.072e-1793.02S-adenosylmethionine synthetase 2 OS=Daucus carota... [more]
METK1_HORVU4.072e-1792.86S-adenosylmethionine synthetase 1 OS=Hordeum vulga... [more]
METK1_BETVU4.072e-1790.70S-adenosylmethionine synthetase 1 OS=Beta vulgaris... [more]
METK_CHLRE5.318e-1786.05S-adenosylmethionine synthetase OS=Chlamydomonas r... [more]
METK_MESCR6.946e-1793.02S-adenosylmethionine synthetase OS=Mesembryanthemu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-692 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-15_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504204 ID=CF504204; Name=CF504204; organism=Citrus sinensis; type=EST; length=213bp
GTTCCGCTTTGCTATTGAGGTCTGGTCTTAAGTCTGAATCTTAGATCTGC
GCCGAAACACTTGCCAGCCACAGCTTGATAAGATGGAGACCTTTCTATTC
ACCTCTGAATCTGTGAACGAGGGTCACCCCGACAAGTTGTGCGACCAGAT
CTCTGATGCGGTGCTTGATGCCTGCCTTGAGCAGGATCCTGAGAGCAAGG
TTGCCTGTGAGAC
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