CF504204

Overview
NameCF504204
Unique NameCF504204
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length213
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1234 contig Csv1_Contig1234:166..378. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504204 vs. ExPASy Swiss-Prot
Match: METK1_MOUSE (S-adenosylmethionine synthetase isoform type-1 OS=Mus musculus GN=Mat1a PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.214e-14
Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = 2
Query:   62 CQPQLDKMETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACE 211
            C   L +   F+FTSESV EGHPDK+CDQISDAVLDA L+QDP +KVACE
Sbjct:    9 CDHSLSEEGAFMFTSESVGEGHPDKICDQISDAVLDAHLKQDPNAKVACE 58          
BLAST of CF504204 vs. ExPASy Swiss-Prot
Match: METK1_BOVIN (S-adenosylmethionine synthetase isoform type-1 OS=Bos taurus GN=MAT1A PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.214e-14
Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = 2
Query:   62 CQPQLDKMETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACE 211
            C   L +   F+FTSESV EGHPDK+CDQISDAVLDA L+QDP +KVACE
Sbjct:    9 CDHSLSEEGAFMFTSESVGEGHPDKICDQISDAVLDAHLKQDPNAKVACE 58          
BLAST of CF504204 vs. ExPASy Swiss-Prot
Match: METK_PROMP (S-adenosylmethionine synthetase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=metK PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.504e-14
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 2
Query:   83 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACE 211
            M  F+FTSESV EGHPDK+CDQISDAVLDA L +DPES+VACE
Sbjct:    1 MSDFIFTSESVTEGHPDKICDQISDAVLDALLSEDPESRVACE 43          
BLAST of CF504204 vs. ExPASy Swiss-Prot
Match: METK_LEPIN (S-adenosylmethionine synthetase OS=Leptospira interrogans GN=metK PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 5.504e-14
Identity = 34/43 (79.07%), Postives = 40/43 (93.02%), Query Frame = 2
Query:   83 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACE 211
            ++ F+FTSESV EGHPDK+CDQISDAVLDA LEQDP+S+VACE
Sbjct:    3 LKDFIFTSESVGEGHPDKVCDQISDAVLDAYLEQDPKSRVACE 45          
BLAST of CF504204 vs. ExPASy Swiss-Prot
Match: METK_LEPIC (S-adenosylmethionine synthetase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=metK PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 5.504e-14
Identity = 34/43 (79.07%), Postives = 40/43 (93.02%), Query Frame = 2
Query:   83 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACE 211
            ++ F+FTSESV EGHPDK+CDQISDAVLDA LEQDP+S+VACE
Sbjct:    3 LKDFIFTSESVGEGHPDKVCDQISDAVLDAYLEQDPKSRVACE 45          
BLAST of CF504204 vs. ExPASy Swiss-Prot
Match: METK2_RAT (S-adenosylmethionine synthetase isoform type-2 OS=Rattus norvegicus GN=Mat2a PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.504e-14
Identity = 34/41 (82.93%), Postives = 39/41 (95.12%), Query Frame = 2
Query:   89 TFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACE 211
            TFLFTSESV EGHPDK+CDQI+DAVLDA L+QDP++KVACE
Sbjct:   17 TFLFTSESVGEGHPDKICDQINDAVLDAHLQQDPDAKVACE 57          
BLAST of CF504204 vs. ExPASy Swiss-Prot
Match: METK_PROMT (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain NATL2A) GN=metK PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.188e-14
Identity = 32/43 (74.42%), Postives = 38/43 (88.37%), Query Frame = 2
Query:   83 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACE 211
            M  ++FTSESV EGHPDK+CDQ+SDAVLDACL +DP S+VACE
Sbjct:    1 MSRYVFTSESVTEGHPDKICDQVSDAVLDACLSEDPTSRVACE 43          
BLAST of CF504204 vs. ExPASy Swiss-Prot
Match: METK_PROMS (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain AS9601) GN=metK PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.188e-14
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 2
Query:   83 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACE 211
            M  F+FTSESV EGHPDK+CDQISDAVLDA L +DPES+VACE
Sbjct:    1 MSDFIFTSESVTEGHPDKICDQISDAVLDALLTEDPESRVACE 43          
BLAST of CF504204 vs. ExPASy Swiss-Prot
Match: METK_PROM9 (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain MIT 9312) GN=metK PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.188e-14
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 2
Query:   83 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACE 211
            M  F+FTSESV EGHPDK+CDQISDAVLDA L +DPES+VACE
Sbjct:    1 MSDFIFTSESVTEGHPDKICDQISDAVLDALLTEDPESRVACE 43          
BLAST of CF504204 vs. ExPASy Swiss-Prot
Match: METK_PROM2 (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain MIT 9215) GN=metK PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.188e-14
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 2
Query:   83 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACE 211
            M  F+FTSESV EGHPDK+CDQISDAVLDA L +DPES+VACE
Sbjct:    1 MSDFIFTSESVTEGHPDKICDQISDAVLDALLTEDPESRVACE 43          
The following BLAST results are available for this feature:
BLAST of CF504204 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
METK1_MOUSE4.214e-1470.00S-adenosylmethionine synthetase isoform type-1 OS=... [more]
METK1_BOVIN4.214e-1470.00S-adenosylmethionine synthetase isoform type-1 OS=... [more]
METK_PROMP5.504e-1479.07S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_LEPIN5.504e-1479.07S-adenosylmethionine synthetase OS=Leptospira inte... [more]
METK_LEPIC5.504e-1479.07S-adenosylmethionine synthetase OS=Leptospira inte... [more]
METK2_RAT5.504e-1482.93S-adenosylmethionine synthetase isoform type-2 OS=... [more]
METK_PROMT7.188e-1474.42S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_PROMS7.188e-1479.07S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_PROM97.188e-1479.07S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_PROM27.188e-1479.07S-adenosylmethionine synthetase OS=Prochlorococcus... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-692 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-15_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504204 ID=CF504204; Name=CF504204; organism=Citrus sinensis; type=EST; length=213bp
GTTCCGCTTTGCTATTGAGGTCTGGTCTTAAGTCTGAATCTTAGATCTGC
GCCGAAACACTTGCCAGCCACAGCTTGATAAGATGGAGACCTTTCTATTC
ACCTCTGAATCTGTGAACGAGGGTCACCCCGACAAGTTGTGCGACCAGAT
CTCTGATGCGGTGCTTGATGCCTGCCTTGAGCAGGATCCTGAGAGCAAGG
TTGCCTGTGAGAC
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