CF504213

Overview
NameCF504213
Unique NameCF504213
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504213 vs. ExPASy Swiss-Prot
Match: RS7_RAT (40S ribosomal protein S7 OS=Rattus norvegicus GN=Rps7 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.946e-35
Identity = 73/113 (64.60%), Postives = 94/113 (83.19%), Query Frame = -1 
Query:  214 RLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQS----PRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 540
            RLVRELEKKFSGK VV IA RRI+  P + S  ++    PRSRTLTAVHDA+LED+V+P+EIVGKR+R +LDGS++IK+ LD  ++NN E+K+E+FSGVY+KLTGKDV F++P
Sbjct:   78 RLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFP 190
[Close]
BLAST of CF504213 vs. ExPASy Swiss-Prot
Match: RS7_MOUSE (40S ribosomal protein S7 OS=Mus musculus GN=Rps7 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.946e-35
Identity = 73/113 (64.60%), Postives = 94/113 (83.19%), Query Frame = -1 
Query:  214 RLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQS----PRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 540
            RLVRELEKKFSGK VV IA RRI+  P + S  ++    PRSRTLTAVHDA+LED+V+P+EIVGKR+R +LDGS++IK+ LD  ++NN E+K+E+FSGVY+KLTGKDV F++P
Sbjct:   78 RLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFP 190
[Close]
BLAST of CF504213 vs. ExPASy Swiss-Prot
Match: RS7_HUMAN (40S ribosomal protein S7 OS=Homo sapiens GN=RPS7 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.946e-35
Identity = 73/113 (64.60%), Postives = 94/113 (83.19%), Query Frame = -1 
Query:  214 RLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQS----PRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 540
            RLVRELEKKFSGK VV IA RRI+  P + S  ++    PRSRTLTAVHDA+LED+V+P+EIVGKR+R +LDGS++IK+ LD  ++NN E+K+E+FSGVY+KLTGKDV F++P
Sbjct:   78 RLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFP 190
[Close]
BLAST of CF504213 vs. ExPASy Swiss-Prot
Match: RS7_FELCA (40S ribosomal protein S7 OS=Felis catus GN=RPS7 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.946e-35
Identity = 73/113 (64.60%), Postives = 94/113 (83.19%), Query Frame = -1 
Query:  214 RLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQS----PRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 540
            RLVRELEKKFSGK VV IA RRI+  P + S  ++    PRSRTLTAVHDA+LED+V+P+EIVGKR+R +LDGS++IK+ LD  ++NN E+K+E+FSGVY+KLTGKDV F++P
Sbjct:   78 RLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFP 190
[Close]
BLAST of CF504213 vs. ExPASy Swiss-Prot
Match: RS7_BOVIN (40S ribosomal protein S7 OS=Bos taurus GN=RPS7 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.946e-35
Identity = 73/113 (64.60%), Postives = 94/113 (83.19%), Query Frame = -1 
Query:  214 RLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQS----PRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 540
            RLVRELEKKFSGK VV IA RRI+  P + S  ++    PRSRTLTAVHDA+LED+V+P+EIVGKR+R +LDGS++IK+ LD  ++NN E+K+E+FSGVY+KLTGKDV F++P
Sbjct:   78 RLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFP 190
[Close]
BLAST of CF504213 vs. ExPASy Swiss-Prot
Match: RS7_TAKRU (40S ribosomal protein S7 OS=Takifugu rubripes GN=rps7 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.462e-34
Identity = 71/113 (62.83%), Postives = 94/113 (83.19%), Query Frame = -1 
Query:  214 RLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQS----PRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 540
            RLVRELEKKFSGK VV IA RRI+  P + S  ++    PRSRTLT+VHDA+LED+V+P+EIVGKR+R ++D S++IK+ LD  ++NN E+K+E+FSGVY+KLTGKDVVF++P
Sbjct:   78 RLVRELEKKFSGKHVVFIAQRRILPKPTRKSRSKNKQKRPRSRTLTSVHDAILEDLVFPSEIVGKRIRVKMDSSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVVFEFP 190
[Close]
BLAST of CF504213 vs. ExPASy Swiss-Prot
Match: RS7_DANRE (40S ribosomal protein S7 OS=Danio rerio GN=rps7 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.257e-34
Identity = 70/113 (61.95%), Postives = 93/113 (82.30%), Query Frame = -1 
Query:  214 RLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQS----PRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 540
            RLVRELEKKFSGK VV IA RRI+  P + S  ++    PRSRTLT VHDA+LED+V+P+EIVGKR+R +LD S++IK+ LD  ++NN E+K+E+F+GVY+KLTGKDV+F++P
Sbjct:   78 RLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTNVHDAILEDLVFPSEIVGKRIRVKLDSSRLIKVHLDKAQQNNVEHKVETFAGVYKKLTGKDVIFEFP 190
[Close]
BLAST of CF504213 vs. ExPASy Swiss-Prot
Match: RS7_NEUCR (40S ribosomal protein S7 OS=Neurospora crassa GN=rps-7 PE=3 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 3.982e-32
Identity = 66/119 (55.46%), Postives = 93/119 (78.15%), Query Frame = -1 
Query:  202 RLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQS------PRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITDA 540
            RL RELEKKFS + V+++A+RRI+  PK+ S  ++      PRSRTLTAVHDA+L D+VYP EIVGKR+R + DGSK +K+ LD KER + +Y+L+++S VYR+LTGK+V+F++P+  A
Sbjct:   82 RLTRELEKKFSDRHVLIVASRRILPRPKRSSRSRNTLKQKRPRSRTLTAVHDAILTDLVYPVEIVGKRLRVKEDGSKTLKVILDEKERGSVDYRLDTYSAVYRRLTGKNVLFEFPLVSA 200
[Close]
BLAST of CF504213 vs. ExPASy Swiss-Prot
Match: RS7_ANOGA (40S ribosomal protein S7 OS=Anopheles gambiae GN=RpS7 PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 3.982e-32
Identity = 66/114 (57.89%), Postives = 92/114 (80.70%), Query Frame = -1 
Query:  214 SRLVRELEKKFSGKDVVLIATRRIVRPPKKG----SAVQSPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 543
            +RLVRELEKKFSGK VV IA RRI+  P +G    +  + PRSRTLTAV+DA+LED+V+PAE+VGKR+R +LDGS++IK+ LD  ++   E+K+++F+ VY+KLTG+DV F++P
Sbjct:   75 TRLVRELEKKFSGKHVVFIAERRILPKPMRGRRDPNKQKRPRSRTLTAVYDAILEDLVFPAEVVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFASVYKKLTGRDVTFEFP 188
[Close]
BLAST of CF504213 vs. ExPASy Swiss-Prot
Match: RS7_CULQU (40S ribosomal protein S7 OS=Culex quinquefasciatus GN=RpS7 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 6.792e-32
Identity = 65/114 (57.02%), Postives = 92/114 (80.70%), Query Frame = -1 
Query:  214 SRLVRELEKKFSGKDVVLIATRRIVRPPKKG----SAVQSPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 543
            +RLVRELEKKFSGK VV I  RRI+  P++G    +  + PRSRTLTAV+DA+LED+V+PAE+VGKR+R +LDGS++IK+ LD  ++   E+K+++F+ VY+KLTG+DV F++P
Sbjct:   75 TRLVRELEKKFSGKHVVFIGERRILPKPQRGRRDPNKQKRPRSRTLTAVYDAILEDLVFPAEVVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFTSVYKKLTGRDVTFEFP 188
The following BLAST results are available for this feature:
BLAST of CF504213 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RS7_RAT2.946e-3564.6040S ribosomal protein S7 OS=Rattus norvegicus GN=R... [more]
RS7_MOUSE2.946e-3564.6040S ribosomal protein S7 OS=Mus musculus GN=Rps7 P... [more]
RS7_HUMAN2.946e-3564.6040S ribosomal protein S7 OS=Homo sapiens GN=RPS7 P... [more]
RS7_FELCA2.946e-3564.6040S ribosomal protein S7 OS=Felis catus GN=RPS7 PE... [more]
RS7_BOVIN2.946e-3564.6040S ribosomal protein S7 OS=Bos taurus GN=RPS7 PE=... [more]
RS7_TAKRU1.462e-3462.8340S ribosomal protein S7 OS=Takifugu rubripes GN=r... [more]
RS7_DANRE3.257e-3461.9540S ribosomal protein S7 OS=Danio rerio GN=rps7 PE... [more]
RS7_NEUCR3.982e-3255.4640S ribosomal protein S7 OS=Neurospora crassa GN=r... [more]
RS7_ANOGA3.982e-3257.8940S ribosomal protein S7 OS=Anopheles gambiae GN=R... [more]
RS7_CULQU6.792e-3257.0240S ribosomal protein S7 OS=Culex quinquefasciatus... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-702 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-15_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504213 ID=CF504213; Name=CF504213; organism=Citrus sinensis; type=EST; length=543bp
AGACATGATGTTTCTCAGCTCAACAATTTCACAAAATGAAGAAACAAAAA
GAAATTCATAAAGCTTCATCTGTCCTATGCAAAATGATGTCATACCAAAT
TTAAGAGTCAAAATTTTAAATAGTACCCTATCCAAATCAAAATTATAGTG
CAACAAAATAAACAGTGACAAACACAAATGATCGTCTGCAACAACTCTTC
AGGCATCTGTAATTGGATAATCAAAAACCACGTCTTTGCCGGTAAGCTTT
CTGTAAACCCCTGAAAAAGACTCCAACTTGTACTCCGTGTTGTTCCTCTC
CTTTGGATCCAAGAAAATCTTGATTATTTTGGATCCATCGAGACGGTATC
TGACACGTTTTCCAACAATCTCAGCTGGGTAAACTACATCTTCAAGCATG
GCATCATGAACAGCTGTGAGTGTGCGACTGCGAGGGCTCTGAACAGCAGA
GCCTTTCTTTGGTGGCCTGACTATCCTTCGGGTGGCAATGAGTACCACAT
CCTTGCCACTGAATTTCTTCTCCAGCTCTCTCACAAGGCGAGA
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