CF504216

Overview
NameCF504216
Unique NameCF504216
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length437
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504216 vs. ExPASy Swiss-Prot
Match: METE_PSEAE (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas aeruginosa GN=metE PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.593e-30
Identity = 70/114 (61.40%), Postives = 78/114 (68.42%), Query Frame = 1
Query:    1 CYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLA 342
            CYS FND+I SI  MDADVITIE SRSD +LL  F E   Y   IGPGVYDIHSPR+PS EEI   + K    +    LWVNPDCGLKTR + E + AL NMVAAA+ LR  LA
Sbjct:  652 CYSEFNDVIESIAAMDADVITIETSRSDMELLEAF-EQFDYPNEIGPGVYDIHSPRVPSREEIVALLRKAARRIPAERLWVNPDCGLKTRAWPETEAALVNMVAAARELRGDLA 764          
BLAST of CF504216 vs. ExPASy Swiss-Prot
Match: METE_PSEAB (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=metE PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.593e-30
Identity = 70/114 (61.40%), Postives = 78/114 (68.42%), Query Frame = 1
Query:    1 CYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLA 342
            CYS FND+I SI  MDADVITIE SRSD +LL  F E   Y   IGPGVYDIHSPR+PS EEI   + K    +    LWVNPDCGLKTR + E + AL NMVAAA+ LR  LA
Sbjct:  652 CYSEFNDVIESIAAMDADVITIETSRSDMELLEAF-EQFDYPNEIGPGVYDIHSPRVPSREEIVALLRKAARRIPAERLWVNPDCGLKTRAWPETEAALVNMVAAARELRGDLA 764          
BLAST of CF504216 vs. ExPASy Swiss-Prot
Match: METE_PSEA8 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas aeruginosa (strain LESB58) GN=metE PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.593e-30
Identity = 70/114 (61.40%), Postives = 78/114 (68.42%), Query Frame = 1
Query:    1 CYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLA 342
            CYS FND+I SI  MDADVITIE SRSD +LL  F E   Y   IGPGVYDIHSPR+PS EEI   + K    +    LWVNPDCGLKTR + E + AL NMVAAA+ LR  LA
Sbjct:  652 CYSEFNDVIESIAAMDADVITIETSRSDMELLEAF-EQFDYPNEIGPGVYDIHSPRVPSREEIVALLRKAARRIPAERLWVNPDCGLKTRAWPETEAALVNMVAAARELRGDLA 764          
BLAST of CF504216 vs. ExPASy Swiss-Prot
Match: METE_SALRD (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Salinibacter ruber (strain DSM 13855) GN=metE PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 2.081e-30
Identity = 65/110 (59.09%), Postives = 81/110 (73.64%), Query Frame = 1
Query:    1 CYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLR 330
            CYS FNDII +I DMDADVI++E SRS  +LL  F +   Y   IGPGVYDIHSPR+PS EE+ + I   L  LE + +WVNPDCGLKTR++ EV+P+L NMV AA+ +R
Sbjct:  656 CYSEFNDIIEAIADMDADVISVEASRSKMELLDSF-DAFDYPNEIGPGVYDIHSPRVPSVEEMEELIRTALDALEPSQMWVNPDCGLKTRRWVEVQPSLENMVQAAENVR 764          
BLAST of CF504216 vs. ExPASy Swiss-Prot
Match: METE_ALHEH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=metE PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 2.081e-30
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 1
Query:    1 CYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLASAK 351
            CYS FNDI+ +I  +DADVITIE SRSD +LL VF EG +Y   IGPGVYDIHSP  PS + +   + K    +    LWVNPDCGLKTR + EV+PAL NMVAAA++LR +   A+
Sbjct:  649 CYSEFNDIMGAIATLDADVITIETSRSDMELLEVF-EGFEYPNEIGPGVYDIHSPNTPSVDWMVRLMEKAARRIPVERLWVNPDCGLKTRAWAEVEPALQNMVAAAEILRERYGQAQ 764          
BLAST of CF504216 vs. ExPASy Swiss-Prot
Match: METE_PSEMY (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas mendocina (strain ymp) GN=metE PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.718e-30
Identity = 68/114 (59.65%), Postives = 79/114 (69.30%), Query Frame = 1
Query:    1 CYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLA 342
            CYS FND+I SI  MDADVITIE SRSD +LL  F E   Y   IGPGVYDIHSPR+P + E+A  + K    +    LWVNPDCGLKTR + E + AL NMVAAA+ LR +LA
Sbjct:  655 CYSEFNDVIESIAAMDADVITIETSRSDMELLEAF-ERFAYPNEIGPGVYDIHSPRVPDSAEMAGLLRKAARRIPLERLWVNPDCGLKTRAWPETEAALVNMVAAARQLRAELA 767          
BLAST of CF504216 vs. ExPASy Swiss-Prot
Match: METE_FLAJ1 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=metE PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.636e-30
Identity = 67/110 (60.91%), Postives = 79/110 (71.82%), Query Frame = 1
Query:    1 CYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLR 330
            CYS FNDII +I DMDADVITIE SRS  +LL  F    KY   IGPGVYDIHSPR+PS++E+   + K  AV+  + LWVNPDCGLKTR + E K AL  MVAAA+ +R
Sbjct:  657 CYSEFNDIIQNIADMDADVITIECSRSQMELLDAFAN-FKYPNEIGPGVYDIHSPRVPSSKEMVRLLEKASAVIPVDQLWVNPDCGLKTRHWNETKKALIEMVAAAQEMR 765          
BLAST of CF504216 vs. ExPASy Swiss-Prot
Match: METE_BAUCH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=metE PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.636e-30
Identity = 67/112 (59.82%), Postives = 79/112 (70.54%), Query Frame = 1
Query:    1 CYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQ 336
            CYS FNDI+ SII MDADVITIE SRS+ KLL  F++  +Y   IGPGVYDIHSP IPS ++I   + K   V+    LWVNPDCGLKTR + E + ALSNMV AA  LR +
Sbjct:  648 CYSEFNDIMDSIIAMDADVITIETSRSNMKLLDTFKQ-YQYPNDIGPGVYDIHSPNIPSEDDIIQLLRKAAQVIPIKRLWVNPDCGLKTRTWLETRKALSNMVNAAHKLRRE 758          
BLAST of CF504216 vs. ExPASy Swiss-Prot
Match: METE_ACIF5 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=metE PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.636e-30
Identity = 65/112 (58.04%), Postives = 78/112 (69.64%), Query Frame = 1
Query:    1 CYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQ 336
            CYS FNDI+ +I  MDADVITIE SRS  +LL  F     Y   IGPGVYDIHSPR+PS EE+   + K + V+    LW+NPDCGLKTRK+ EV PAL NMV AA+ +R +
Sbjct:  672 CYSEFNDILPAIAAMDADVITIETSRSQMELLDAFAT-FNYPNEIGPGVYDIHSPRVPSVEEMVGLMEKAVKVVPAERLWINPDCGLKTRKWAEVTPALENMVEAARQVRAR 782          
BLAST of CF504216 vs. ExPASy Swiss-Prot
Match: METE_ACIF2 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=metE PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.636e-30
Identity = 65/112 (58.04%), Postives = 78/112 (69.64%), Query Frame = 1
Query:    1 CYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQ 336
            CYS FNDI+ +I  MDADVITIE SRS  +LL  F     Y   IGPGVYDIHSPR+PS EE+   + K + V+    LW+NPDCGLKTRK+ EV PAL NMV AA+ +R +
Sbjct:  672 CYSEFNDILPAIAAMDADVITIETSRSQMELLDAFAT-FNYPNEIGPGVYDIHSPRVPSVEEMVGLMEKAVKVVPAERLWINPDCGLKTRKWAEVTPALENMVEAARQVRAR 782          
The following BLAST results are available for this feature:
BLAST of CF504216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 269
Match NameE-valueIdentityDescription
METE_PSEAE1.593e-3061.405-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PSEAB1.593e-3061.405-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PSEA81.593e-3061.405-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SALRD2.081e-3059.095-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ALHEH2.081e-3057.265-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PSEMY2.718e-3059.655-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_FLAJ14.636e-3060.915-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BAUCH4.636e-3059.825-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ACIF54.636e-3058.045-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ACIF24.636e-3058.045-methyltetrahydropteroyltriglutamate--homocystein... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-705 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-15_E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504216 ID=CF504216; Name=CF504216; organism=Citrus sinensis; type=EST; length=437bp
TGCTACTCCAACTTCAACGACATTATCCACTCAATTATCGACATGGATGC
TGATGTGATCACCATTGAGAACTCTCGTTCTGATGAGAAGCTCCTGTCTG
TCTTCCGTGAGGGAGTCAAGTATGGTGCTGGAATTGGCCCTGGTGTGTAT
GACATCCACTCTCCAAGAATACCATCAACTGAAGAAATTGCTGACAGAAT
CAACAAGATGCTTGCTGTGCTAGAAACCAACATTTTGTGGGTTAACCCTG
ACTGTGGTCTTAAGACTCGCAAGTACACTGAGGTGAAGCCAGCCCTCTCA
AACATGGTCGCTGCTGCCAAGCTACTCCGCACCCAGCTTGCCAGTGCCAA
GTGAGTGGTTCTGGAGATTGGAGGGATACTTCCTGAGCCATTGATTTTTT
TTTTTTTCACTTTAAACAAAGAAAGAAAATTCCTGTC
back to top