CF504216

Overview
NameCF504216
Unique NameCF504216
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length437
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504216 vs. ExPASy Swiss-Prot
Match: METE_NITOC (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=metE PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 7.401e-28
Identity = 64/111 (57.66%), Postives = 76/111 (68.47%), Query Frame = 1
Query:    1 CYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRT 333
            CYS FNDIIH+I  +DADVITIE SRSD +LL+ F    +Y   IGPGVYDIHSP +P+  +I   I K    +    LWVNPDCGLKTR + EV+ AL  MVAAA  LR+
Sbjct:  648 CYSEFNDIIHAIAALDADVITIETSRSDGELLAAFA-AFEYPNEIGPGVYDIHSPVVPTEAQIVGLIKKAAEYIPAERLWVNPDCGLKTRAWPEVETALRTMVAAAHGLRS 757          
BLAST of CF504216 vs. ExPASy Swiss-Prot
Match: METE_BIFAA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=metE PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 7.401e-28
Identity = 62/114 (54.39%), Postives = 77/114 (67.54%), Query Frame = 1
Query:    1 CYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLA 342
            CYS FNDII  I  MDADVI+ E SR D  +L    +   +    GPGVYDIHSPRIPS +EI DRI ++L  ++   +W+NPDCGLKTR   E  P+L N+VAAAK +R +LA
Sbjct:  655 CYSEFNDIIKDIDAMDADVISFEASRGDLVVLDAIHDA-NFETEAGPGVYDIHSPRIPSEQEIEDRIYEILKKMDVEKVWINPDCGLKTRGNAETWPSLENLVAAAKAVRAKLA 767          
BLAST of CF504216 vs. ExPASy Swiss-Prot
Match: METE_ERWT9 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=metE PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 9.666e-28
Identity = 64/110 (58.18%), Postives = 76/110 (69.09%), Query Frame = 1
Query:    1 CYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLR 330
            CY  FNDI+ SI  +DADVITIE SRSD +LL  F E  +Y   IGPGVYDIHSP +PS E +   + K    + T  LWVNPDCGLKTR +TE + AL+NMV AA+ LR
Sbjct:  644 CYCEFNDIMDSIAALDADVITIETSRSDMELLESFEE-FEYPNEIGPGVYDIHSPNVPSVEWVEALLLKAAQRIPTERLWVNPDCGLKTRGWTETRQALANMVKAAQNLR 752          
BLAST of CF504216 vs. ExPASy Swiss-Prot
Match: METE_SHEON (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Shewanella oneidensis GN=metE PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.262e-27
Identity = 65/113 (57.52%), Postives = 75/113 (66.37%), Query Frame = 1
Query:    1 CYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQL 339
            CYS FND I +I  MDADVITIE SRS  +LL+ F E  +Y   IGPGVYDIHSP  PS E +   I K    +    LWVNPDCGLKTR + EV+PAL NMV A + LR +L
Sbjct:  648 CYSEFNDTIAAIAAMDADVITIETSRSRMELLNAF-EDFEYPNEIGPGVYDIHSPNTPSVEAMVHLIEKAAQKVPVRQLWVNPDCGLKTRTWDEVEPALKNMVDATRELRRRL 759          
BLAST of CF504216 vs. ExPASy Swiss-Prot
Match: METE_SERP5 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Serratia proteamaculans (strain 568) GN=metE PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.262e-27
Identity = 64/114 (56.14%), Postives = 76/114 (66.67%), Query Frame = 1
Query:    1 CYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLA 342
            CY  FNDI+ SI  +DADVITIE SRSD  LL  F+E  +Y   IGPGVYDIHSP +PS E I   + K    +    LWVNPDCGLKTR + E + +L+NMV AA+ LR Q A
Sbjct:  646 CYCEFNDIMDSIAALDADVITIETSRSDMDLLEAFKE-FEYPNEIGPGVYDIHSPNVPSVEWIEALLRKAAQNIPAERLWVNPDCGLKTRGWPETRQSLANMVLAAQRLREQQA 758          
BLAST of CF504216 vs. ExPASy Swiss-Prot
Match: METE_CITK8 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=metE PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.262e-27
Identity = 64/110 (58.18%), Postives = 75/110 (68.18%), Query Frame = 1
Query:    1 CYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLR 330
            CY  FNDI+ SI  +DADVITIE SRSD +LL  F E  +Y   IGPGVYDIHSP +PS E I   +NK    +    LWVNPDCGLKTR + E + AL+NMV AA+ LR
Sbjct:  643 CYCEFNDIMDSIAALDADVITIETSRSDMELLESFEE-FEYPNEIGPGVYDIHSPNVPSVEWIEALLNKAAQRIPAERLWVNPDCGLKTRGWPETRAALANMVKAAQNLR 751          
BLAST of CF504216 vs. ExPASy Swiss-Prot
Match: METE_BURXL (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia xenovorans (strain LB400) GN=metE PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.262e-27
Identity = 64/115 (55.65%), Postives = 77/115 (66.96%), Query Frame = 1
Query:    1 CYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLAS 345
            CYS FNDI+ SI  MDADVITIE SRS  +LL  F     Y   IGPGVYDIHSPR+P  + +   + +   V+    LWVNPDCGLKTR + E + AL+NMV AAK LR +LA+
Sbjct:  643 CYSEFNDILPSIAAMDADVITIETSRSAMELLDGFG-AFAYPNEIGPGVYDIHSPRVPGADAMQRLLERACEVIPAERLWVNPDCGLKTRGWPETEAALANMVRAAKALRAKLAA 756          
BLAST of CF504216 vs. ExPASy Swiss-Prot
Match: METE_BURPP (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=metE PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.262e-27
Identity = 64/115 (55.65%), Postives = 77/115 (66.96%), Query Frame = 1
Query:    1 CYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLAS 345
            CYS FNDI+ SI  MDADVITIE SRS  +LL  F     Y   IGPGVYDIHSPR+P  + +   + +   V+    LWVNPDCGLKTR + E + AL+NMV AAK LR +LA+
Sbjct:  643 CYSEFNDILPSIAAMDADVITIETSRSAMELLDGFG-AFAYPNEIGPGVYDIHSPRVPDAQAMQRLLERACEVIPAERLWVNPDCGLKTRGWPETEAALTNMVRAAKALRAKLAA 756          
BLAST of CF504216 vs. ExPASy Swiss-Prot
Match: METE_BACSU (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bacillus subtilis GN=metE PE=1 SV=4)

HSP 1 Score: 121.709 bits (304), Expect = 1.262e-27
Identity = 65/112 (58.04%), Postives = 76/112 (67.86%), Query Frame = 1
Query:    1 CYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQ 336
            CYSNF DI+ +I D+DADVITIE+SRS    L   +    Y  G+G GVYDIHSPR+PSTEE+ + I   LAV  T+  WVNPDCGLKTR+  E   AL NMV AAK  R Q
Sbjct:  647 CYSNFEDIVDTINDLDADVITIEHSRSHGGFLDYLKNH-PYLKGLGLGVYDIHSPRVPSTEEMYNIIVDALAVCPTDRFWVNPDCGLKTRQQEETVAALKNMVEAAKQARAQ 757          
BLAST of CF504216 vs. ExPASy Swiss-Prot
Match: METE_BACA2 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bacillus amyloliquefaciens (strain FZB42) GN=metE PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.262e-27
Identity = 65/114 (57.02%), Postives = 77/114 (67.54%), Query Frame = 1
Query:    1 CYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLA 342
            CYSNF DI+ +I D+DADVITIE+SRS    L   +E   Y  G+G GVYDIHSPR+P+TEEI   I+  L V  T+  WVNPDCGLKTR+  E   AL NMV AAK  R + A
Sbjct:  647 CYSNFEDIVDTINDLDADVITIEHSRSHGGFLEYLKEH-PYVKGLGLGVYDIHSPRVPATEEIYQIIDDALEVCPTDRFWVNPDCGLKTRQQEETVAALKNMVDAAKQARKKQA 759          
The following BLAST results are available for this feature:
BLAST of CF504216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 269
Match NameE-valueIdentityDescription
METE_NITOC7.401e-2857.665-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BIFAA7.401e-2854.395-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ERWT99.666e-2858.185-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SHEON1.262e-2757.525-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SERP51.262e-2756.145-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CITK81.262e-2758.185-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURXL1.262e-2755.655-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURPP1.262e-2755.655-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BACSU1.262e-2758.045-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BACA21.262e-2757.025-methyltetrahydropteroyltriglutamate--homocystein... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-705 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-15_E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504216 ID=CF504216; Name=CF504216; organism=Citrus sinensis; type=EST; length=437bp
TGCTACTCCAACTTCAACGACATTATCCACTCAATTATCGACATGGATGC
TGATGTGATCACCATTGAGAACTCTCGTTCTGATGAGAAGCTCCTGTCTG
TCTTCCGTGAGGGAGTCAAGTATGGTGCTGGAATTGGCCCTGGTGTGTAT
GACATCCACTCTCCAAGAATACCATCAACTGAAGAAATTGCTGACAGAAT
CAACAAGATGCTTGCTGTGCTAGAAACCAACATTTTGTGGGTTAACCCTG
ACTGTGGTCTTAAGACTCGCAAGTACACTGAGGTGAAGCCAGCCCTCTCA
AACATGGTCGCTGCTGCCAAGCTACTCCGCACCCAGCTTGCCAGTGCCAA
GTGAGTGGTTCTGGAGATTGGAGGGATACTTCCTGAGCCATTGATTTTTT
TTTTTTTCACTTTAAACAAAGAAAGAAAATTCCTGTC
back to top