CF504218

Overview
NameCF504218
Unique NameCF504218
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length336
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA5_CAEEL (Proteasome subunit alpha type-5 OS=Caenorhabditis elegans GN=pas-5 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.360e-11
Identity = 32/78 (41.03%), Postives = 51/78 (65.38%), Query Frame = 3
Query:  102 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            YDR +  FSPEGRLFQVEYA +AVK  G TSIG++  + V +  +K+   KL+ + ++  +  + +++G+   G+ AD
Sbjct:    8 YDRGVNTFSPEGRLFQVEYAIEAVK-LGSTSIGIKTSEGVLLAAEKRSTSKLMVNDAIEKISKVDQHIGVTFAGLIAD 84          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA2_XENLA (Proteasome subunit alpha type-2 OS=Xenopus laevis GN=psma2 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.360e-11
Identity = 34/79 (43.04%), Postives = 49/79 (62.03%), Query Frame = 3
Query:   99 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            GY   +T FSP G+L Q+EYA  AV AAG  S+G++  + V + T+KK    L D  S   + PITK++G++ +GM  D
Sbjct:    5 GYSFSLTTFSPSGKLVQIEYALAAV-AAGAPSVGIKATNGVVLATEKKQKSILYDEQSAHKVEPITKHIGMVYSGMGPD 82          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA4_DICDI (Proteasome subunit alpha type-4 OS=Dictyostelium discoideum GN=psmA4 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.389e-11
Identity = 35/80 (43.75%), Postives = 53/80 (66.25%), Query Frame = 3
Query:  102 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTH-LFPITKYLGLLATGMTAD 335
            YD+  TIFSPEGR++QVEYA  A++ AG T +G+  KD + +  +KK   KLLD  TS++  +F I +++     G+T+D
Sbjct:    5 YDQRTTIFSPEGRVYQVEYAMTAIRHAGAT-VGILAKDGIVLAAEKKTTAKLLDSSTSISEKMFKIDEHVVCAVAGITSD 83          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA7L_MOUSE (Proteasome subunit alpha type-7-like OS=Mus musculus GN=Psma8 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.732e-11
Identity = 35/78 (44.87%), Postives = 51/78 (65.38%), Query Frame = 3
Query:  102 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            YDR IT+FSP+G LFQVEYA +AVK  G T++G+RG + V +  +KK   KL D  +V  +  +  ++ +   G+TAD
Sbjct:    5 YDRAITVFSPDGHLFQVEYAQEAVK-KGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKICALDDHVCMAFAGLTAD 81          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA7L_MACFA (Proteasome subunit alpha type-7-like OS=Macaca fascicularis GN=PSMA7L PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.732e-11
Identity = 35/78 (44.87%), Postives = 51/78 (65.38%), Query Frame = 3
Query:  102 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            YDR IT+FSP+G LFQVEYA +AVK  G T++G+RG + V +  +KK   KL D  +V  +  +  ++ +   G+TAD
Sbjct:    5 YDRAITVFSPDGHLFQVEYAQEAVK-KGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKICALDDHVCMAFAGLTAD 81          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA4_YEAST (Proteasome component Y13 OS=Saccharomyces cerevisiae GN=PRE9 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.486e-11
Identity = 33/79 (41.77%), Postives = 49/79 (62.03%), Query Frame = 3
Query:  102 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDH-TSVTHLFPITKYLGLLATGMTAD 335
            YD   TIFSPEGRL+QVEYA +++  AG T+IG+   D + +  ++KV   LL+  TS   L+ +   + +   G+TAD
Sbjct:    6 YDSRTTIFSPEGRLYQVEYALESISHAG-TAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTAD 83          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA4_SPIOL (Proteasome subunit alpha type-4 OS=Spinacia oleracea GN=PAC1 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.777e-11
Identity = 35/79 (44.30%), Postives = 50/79 (63.29%), Query Frame = 3
Query:  102 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLLATGMTAD 335
            YD   TIFSPEGRL+QVEYA +A+  AG ++IG+  KD V ++ +KKV  KLL   TS   ++ I  ++     G+ +D
Sbjct:    5 YDSRTTIFSPEGRLYQVEYAMEAIGNAG-SAIGILAKDGVVLIGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSD 82          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA4_SCHPO (Probable proteasome subunit alpha type-4 OS=Schizosaccharomyces pombe GN=SPAC13C5.01c PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.777e-11
Identity = 36/79 (45.57%), Postives = 49/79 (62.03%), Query Frame = 3
Query:  102 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLLATGMTAD 335
            YD   TIFSPEGRL+QVEYA +A+  AGV ++G+  KD + +  +KKV  KLL+   S   L+ I   +     G+TAD
Sbjct:    5 YDSRTTIFSPEGRLYQVEYALEAINHAGV-ALGIVAKDGIVLAAEKKVTSKLLEQEESAEKLYHIGDNMLCAVAGLTAD 82          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA4_PETHY (Proteasome subunit alpha type-4 OS=Petunia hybrida GN=PAC1 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.777e-11
Identity = 36/79 (45.57%), Postives = 50/79 (63.29%), Query Frame = 3
Query:  102 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLLATGMTAD 335
            YD   TIFSPEGRL+QVEYA +A+  AG ++IG+  KD V +V +KKV  KLL   TS   ++ I  ++     G+ +D
Sbjct:    5 YDSRTTIFSPEGRLYQVEYAMEAIGNAG-SAIGISSKDGVVLVGEKKVTSKLLQTSTSSEKMYKIDDHVACAVAGIMSD 82          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA4_ARATH (Proteasome subunit alpha type-4 OS=Arabidopsis thaliana GN=PAC1 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.777e-11
Identity = 35/79 (44.30%), Postives = 50/79 (63.29%), Query Frame = 3
Query:  102 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLLATGMTAD 335
            YD   TIFSPEGRL+QVEYA +A+  AG ++IG+  KD V ++ +KKV  KLL   TS   ++ I  ++     G+ +D
Sbjct:    5 YDSRTTIFSPEGRLYQVEYAMEAIGNAG-SAIGILSKDGVVLIGEKKVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSD 82          
The following BLAST results are available for this feature:
BLAST of CF504218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
PSA5_CAEEL3.360e-1141.03Proteasome subunit alpha type-5 OS=Caenorhabditis ... [more]
PSA2_XENLA3.360e-1143.04Proteasome subunit alpha type-2 OS=Xenopus laevis ... [more]
PSA4_DICDI4.389e-1143.75Proteasome subunit alpha type-4 OS=Dictyostelium d... [more]
PSA7L_MOUSE5.732e-1144.87Proteasome subunit alpha type-7-like OS=Mus muscul... [more]
PSA7L_MACFA5.732e-1144.87Proteasome subunit alpha type-7-like OS=Macaca fas... [more]
PSA4_YEAST7.486e-1141.77Proteasome component Y13 OS=Saccharomyces cerevisi... [more]
PSA4_SPIOL9.777e-1144.30Proteasome subunit alpha type-4 OS=Spinacia olerac... [more]
PSA4_SCHPO9.777e-1145.57Probable proteasome subunit alpha type-4 OS=Schizo... [more]
PSA4_PETHY9.777e-1145.57Proteasome subunit alpha type-4 OS=Petunia hybrida... [more]
PSA4_ARATH9.777e-1144.30Proteasome subunit alpha type-4 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-707 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-15_E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504218 ID=CF504218; Name=CF504218; organism=Citrus sinensis; type=EST; length=336bp
TGCGGATTGATCCGACAAGTAGAACTGCGTGAAGAAGAAAATTGAAAGAG
AGGAATCACTGTAGCGTATAATCAACAATGAGTAGAGGAAGTGGAGGAGG
ATACGATCGTCATATTACAATTTTTTCGCCTGAGGGTCGTCTCTTTCAAG
TCGAGTATGCTTTCAAAGCTGTTAAGGCTGCTGGGGTTACCTCTATTGGT
GTTCGAGGAAAGGATTCAGTCTGTGTTGTGACTCAGAAGAAGGTCCCGGA
CAAGCTTTTGGATCATACAAGTGTCACACATCTTTTCCCAATCACAAAGT
ACCTTGGATTGCTGGCAACTGGAATGACAGCTGATG
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