CF504218

Overview
NameCF504218
Unique NameCF504218
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length336
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSMA_METMA (Proteasome subunit alpha OS=Methanosarcina mazei GN=psmA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.486e-14
Identity = 35/79 (44.30%), Postives = 55/79 (69.62%), Query Frame = 3
Query:   99 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            GYDR IT+FSP+GRLFQVEYA +AVK  G T++G++  D V ++  K++  +L++  S+  +F I  ++G   +G+ AD
Sbjct:    8 GYDRAITVFSPDGRLFQVEYAREAVK-RGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDDHIGAATSGLVAD 85          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSMA_METBF (Proteasome subunit alpha OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=psmA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.486e-14
Identity = 35/79 (44.30%), Postives = 55/79 (69.62%), Query Frame = 3
Query:   99 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            GYDR IT+FSP+GRLFQVEYA +AVK  G T++G++  D V ++  K++  +L++  S+  +F I  ++G   +G+ AD
Sbjct:    8 GYDRAITVFSPDGRLFQVEYAREAVK-RGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDDHIGAATSGLVAD 85          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSMA_METS3 (Proteasome subunit alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=psmA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.247e-14
Identity = 36/79 (45.57%), Postives = 54/79 (68.35%), Query Frame = 3
Query:   99 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            GYDR IT+FSP+GRLFQVEYA +AVK  G TSIG++  + + +   K+    L++ TS+  +F I +++G   +G+ AD
Sbjct:    8 GYDRAITVFSPDGRLFQVEYAREAVK-RGTTSIGIKCSEGIVLAVDKRTTSNLVEATSIEKIFKIDEHIGAATSGLVAD 85          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA5_TRYBB (Proteasome subunit alpha type-5 OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.247e-14
Identity = 35/78 (44.87%), Postives = 54/78 (69.23%), Query Frame = 3
Query:  102 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            YDR +  FSPEGR+FQ+EYA +A+K  G TS+G++  D+V +  +K+VP  L+D +SV  +  I  ++G + +GM AD
Sbjct:    8 YDRGVNTFSPEGRIFQIEYAIEAIKL-GSTSLGIQTPDAVIIAAEKRVPSTLVDPSSVNKILEIDHHIGTVLSGMVAD 84          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSMA_METVS (Proteasome subunit alpha OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=psmA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.539e-14
Identity = 36/79 (45.57%), Postives = 55/79 (69.62%), Query Frame = 3
Query:   99 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            GYDR ITIFSPEGRL+QVEYA +AV+  G T++G++ KD V +   +++  KL+D +S+  +F I  ++    +G+ AD
Sbjct:    9 GYDRAITIFSPEGRLYQVEYAREAVR-RGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVAD 86          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSMA_METMP (Proteasome subunit alpha OS=Methanococcus maripaludis GN=psmA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.539e-14
Identity = 36/79 (45.57%), Postives = 55/79 (69.62%), Query Frame = 3
Query:   99 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            GYDR ITIFSPEGRL+QVEYA +AV+  G T++G++ KD V +   +++  KL+D +S+  +F I  ++    +G+ AD
Sbjct:    9 GYDRAITIFSPEGRLYQVEYAREAVR-RGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVAD 86          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSMA_METMJ (Proteasome subunit alpha OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=psmA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.539e-14
Identity = 34/79 (43.04%), Postives = 56/79 (70.89%), Query Frame = 3
Query:   99 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            GYDR IT+FSP+GRL+QVEYA +AVK  G T++G++  + V ++  K+V  +LL+  S+  +F I  ++G+ ++G+  D
Sbjct:    8 GYDRAITVFSPDGRLYQVEYAREAVK-RGTTAVGIKCSEGVVLIVDKRVTSRLLEPVSIEKIFKIDAHIGVASSGLVGD 85          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSMA_METM7 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=psmA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.539e-14
Identity = 36/79 (45.57%), Postives = 55/79 (69.62%), Query Frame = 3
Query:   99 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            GYDR ITIFSPEGRL+QVEYA +AV+  G T++G++ KD V +   +++  KL+D +S+  +F I  ++    +G+ AD
Sbjct:    9 GYDRAITIFSPEGRLYQVEYAREAVR-RGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVAD 86          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSMA_METM5 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=psmA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.539e-14
Identity = 36/79 (45.57%), Postives = 55/79 (69.62%), Query Frame = 3
Query:   99 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            GYDR ITIFSPEGRL+QVEYA +AV+  G T++G++ KD V +   +++  KL+D +S+  +F I  ++    +G+ AD
Sbjct:    9 GYDRAITIFSPEGRLYQVEYAREAVR-RGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVAD 86          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSMA_THESM (Proteasome subunit alpha OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=psmA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.234e-14
Identity = 37/79 (46.84%), Postives = 55/79 (69.62%), Query Frame = 3
Query:   99 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            GYDR IT+FSP+GRLFQV+YA +AVK  G T++GV+ KD V +  +K+V  KL++  S   +F I  ++   ++G+ AD
Sbjct:    9 GYDRAITVFSPDGRLFQVQYAREAVK-RGATAVGVKCKDGVVLAVEKRVTSKLIEPESYEKIFQIDDHIAAASSGIIAD 86          
The following BLAST results are available for this feature:
BLAST of CF504218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
PSMA_METMA2.486e-1444.30Proteasome subunit alpha OS=Methanosarcina mazei G... [more]
PSMA_METBF2.486e-1444.30Proteasome subunit alpha OS=Methanosarcina barkeri... [more]
PSMA_METS33.247e-1445.57Proteasome subunit alpha OS=Methanobrevibacter smi... [more]
PSA5_TRYBB3.247e-1444.87Proteasome subunit alpha type-5 OS=Trypanosoma bru... [more]
PSMA_METVS5.539e-1445.57Proteasome subunit alpha OS=Methanococcus vannieli... [more]
PSMA_METMP5.539e-1445.57Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METMJ5.539e-1443.04Proteasome subunit alpha OS=Methanoculleus marisni... [more]
PSMA_METM75.539e-1445.57Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METM55.539e-1445.57Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_THESM7.234e-1446.84Proteasome subunit alpha OS=Thermococcus sibiricus... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-707 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-15_E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504218 ID=CF504218; Name=CF504218; organism=Citrus sinensis; type=EST; length=336bp
TGCGGATTGATCCGACAAGTAGAACTGCGTGAAGAAGAAAATTGAAAGAG
AGGAATCACTGTAGCGTATAATCAACAATGAGTAGAGGAAGTGGAGGAGG
ATACGATCGTCATATTACAATTTTTTCGCCTGAGGGTCGTCTCTTTCAAG
TCGAGTATGCTTTCAAAGCTGTTAAGGCTGCTGGGGTTACCTCTATTGGT
GTTCGAGGAAAGGATTCAGTCTGTGTTGTGACTCAGAAGAAGGTCCCGGA
CAAGCTTTTGGATCATACAAGTGTCACACATCTTTTCCCAATCACAAAGT
ACCTTGGATTGCTGGCAACTGGAATGACAGCTGATG
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