CF504218

Overview
NameCF504218
Unique NameCF504218
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length336
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSMA_SULIY (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.124e-13
Identity = 36/79 (45.57%), Postives = 53/79 (67.09%), Query Frame = 3
Query:   99 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            GYDR ITIFSP+G L+QV+YAF+AVK  G T+IG++ K  V + ++K+    LLD  S+  +F I  ++G    G+ +D
Sbjct:    9 GYDRAITIFSPDGSLYQVDYAFEAVK-KGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASD 86          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSMA_SULIN (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=psmA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.124e-13
Identity = 36/79 (45.57%), Postives = 53/79 (67.09%), Query Frame = 3
Query:   99 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            GYDR ITIFSP+G L+QV+YAF+AVK  G T+IG++ K  V + ++K+    LLD  S+  +F I  ++G    G+ +D
Sbjct:    9 GYDRAITIFSPDGSLYQVDYAFEAVK-KGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASD 86          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSMA_SULIM (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.124e-13
Identity = 36/79 (45.57%), Postives = 53/79 (67.09%), Query Frame = 3
Query:   99 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            GYDR ITIFSP+G L+QV+YAF+AVK  G T+IG++ K  V + ++K+    LLD  S+  +F I  ++G    G+ +D
Sbjct:    9 GYDRAITIFSPDGSLYQVDYAFEAVK-KGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASD 86          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSMA_SULIL (Proteasome subunit alpha OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.124e-13
Identity = 36/79 (45.57%), Postives = 53/79 (67.09%), Query Frame = 3
Query:   99 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            GYDR ITIFSP+G L+QV+YAF+AVK  G T+IG++ K  V + ++K+    LLD  S+  +F I  ++G    G+ +D
Sbjct:    9 GYDRAITIFSPDGSLYQVDYAFEAVK-KGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASD 86          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSMA_SULIK (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=psmA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.124e-13
Identity = 36/79 (45.57%), Postives = 53/79 (67.09%), Query Frame = 3
Query:   99 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            GYDR ITIFSP+G L+QV+YAF+AVK  G T+IG++ K  V + ++K+    LLD  S+  +F I  ++G    G+ +D
Sbjct:    9 GYDRAITIFSPDGSLYQVDYAFEAVK-KGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASD 86          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSMA_SULIA (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.16.27) GN=psmA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.124e-13
Identity = 36/79 (45.57%), Postives = 53/79 (67.09%), Query Frame = 3
Query:   99 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            GYDR ITIFSP+G L+QV+YAF+AVK  G T+IG++ K  V + ++K+    LLD  S+  +F I  ++G    G+ +D
Sbjct:    9 GYDRAITIFSPDGSLYQVDYAFEAVK-KGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASD 86          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSMA_PICTO (Proteasome subunit alpha OS=Picrophilus torridus GN=psmA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.124e-13
Identity = 36/78 (46.15%), Postives = 56/78 (71.79%), Query Frame = 3
Query:  102 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            YDR IT+FSP+GRLFQVEYA +AVK  G T++G++ KD V ++++KKV  +L++ TS+  +  I   +  + +G+ AD
Sbjct:    8 YDRAITVFSPDGRLFQVEYAREAVK-KGSTALGIKFKDGVALISEKKVRSRLVEKTSLEKIQLIDDRVAAVTSGLVAD 84          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA7_DICDI (Proteasome subunit alpha type-7 OS=Dictyostelium discoideum GN=psmA7 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.124e-13
Identity = 37/82 (45.12%), Postives = 52/82 (63.41%), Query Frame = 3
Query:   90 SGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            S   YDR IT+FSP+G LFQVEYA +AV+  G  ++GVRGKD + +  +KK   KL D  S+  +  +  ++ L   G+TAD
Sbjct:    2 SSARYDRAITVFSPDGHLFQVEYAMEAVR-KGTVAVGVRGKDVIVLGVEKKATAKLQDARSIRKIVKLDDHICLTFAGLTAD 82          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSMA_METS5 (Proteasome subunit alpha OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=psmA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.998e-13
Identity = 36/79 (45.57%), Postives = 56/79 (70.89%), Query Frame = 3
Query:   99 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            GYDR ITIFSP+G L+QV+YAF+AVK  G T++GV+ K++V ++ +KK   +LLD  S+  +F +  ++G    G+ +D
Sbjct:    9 GYDRAITIFSPDGSLYQVDYAFEAVK-KGWTTLGVKTKNAVVILGEKKKASQLLDVDSIEKVFLLDDHVGCSFAGLASD 86          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA7_TRYBB (Proteasome subunit alpha type-7 OS=Trypanosoma brucei brucei GN=PSA4 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.045e-12
Identity = 34/78 (43.59%), Postives = 54/78 (69.23%), Query Frame = 3
Query:  102 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            YDR IT+FSP+G LFQVEYA +AV+  G+ ++GV+GKDS+    +KK   KL D  +   ++ + +++ L + G++AD
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVR-KGLCAVGVKGKDSIIFAVEKKSVQKLQDSRTTRKIYKLDEHIYLASAGLSAD 79          
The following BLAST results are available for this feature:
BLAST of CF504218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
PSMA_SULIY6.124e-1345.57Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIN6.124e-1345.57Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIM6.124e-1345.57Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIL6.124e-1345.57Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIK6.124e-1345.57Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIA6.124e-1345.57Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_PICTO6.124e-1346.15Proteasome subunit alpha OS=Picrophilus torridus G... [more]
PSA7_DICDI6.124e-1345.12Proteasome subunit alpha type-7 OS=Dictyostelium d... [more]
PSMA_METS57.998e-1345.57Proteasome subunit alpha OS=Metallosphaera sedula ... [more]
PSA7_TRYBB1.045e-1243.59Proteasome subunit alpha type-7 OS=Trypanosoma bru... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-707 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-15_E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504218 ID=CF504218; Name=CF504218; organism=Citrus sinensis; type=EST; length=336bp
TGCGGATTGATCCGACAAGTAGAACTGCGTGAAGAAGAAAATTGAAAGAG
AGGAATCACTGTAGCGTATAATCAACAATGAGTAGAGGAAGTGGAGGAGG
ATACGATCGTCATATTACAATTTTTTCGCCTGAGGGTCGTCTCTTTCAAG
TCGAGTATGCTTTCAAAGCTGTTAAGGCTGCTGGGGTTACCTCTATTGGT
GTTCGAGGAAAGGATTCAGTCTGTGTTGTGACTCAGAAGAAGGTCCCGGA
CAAGCTTTTGGATCATACAAGTGTCACACATCTTTTCCCAATCACAAAGT
ACCTTGGATTGCTGGCAACTGGAATGACAGCTGATG
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