CF504218

Overview
NameCF504218
Unique NameCF504218
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length336
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9226 contig Csv1_Contig9226:54..389. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA5B_ARATH (Proteasome subunit alpha type-5-B OS=Arabidopsis thaliana GN=PAE2 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.364e-12
Identity = 35/78 (44.87%), Postives = 52/78 (66.67%), Query Frame = 3
Query:  102 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            YDR +  FSPEGRLFQVEYA +A+K  G T+IGV+ K+ V +  +K++   LL+ +SV  +  I  ++G   +G+ AD
Sbjct:    8 YDRGVNTFSPEGRLFQVEYAIEAIK-LGSTAIGVKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIAD 84          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA5A_ARATH (Proteasome subunit alpha type-5-A OS=Arabidopsis thaliana GN=PAE1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.364e-12
Identity = 35/78 (44.87%), Postives = 52/78 (66.67%), Query Frame = 3
Query:  102 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            YDR +  FSPEGRLFQVEYA +A+K  G T+IGV+ K+ V +  +K++   LL+ +SV  +  I  ++G   +G+ AD
Sbjct:    8 YDRGVNTFSPEGRLFQVEYAIEAIK-LGSTAIGVKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIAD 84          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSMA_THEGJ (Proteasome subunit alpha OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=psmA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.782e-12
Identity = 34/79 (43.04%), Postives = 53/79 (67.09%), Query Frame = 3
Query:   99 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            GYDR IT+FSP+GRLFQV YA +AVK  G T++GV+ K  V +  +K++  +L++ +S   +F I  ++    +G+ AD
Sbjct:    9 GYDRAITVFSPDGRLFQVNYAREAVK-RGATAVGVKWKGGVVLAVEKRITSRLIEPSSYEKIFQIDDHIAAAPSGIIAD 86          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSMA_METKA (Proteasome subunit alpha OS=Methanopyrus kandleri GN=psmA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.782e-12
Identity = 34/78 (43.59%), Postives = 53/78 (67.95%), Query Frame = 3
Query:  102 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            YDR IT+FSP+GRLFQVEYA +AVK  G T++G++ ++ V +   K+V  KL++  S+  ++ I  ++G    G+ AD
Sbjct:   10 YDRAITVFSPDGRLFQVEYAREAVK-RGTTALGIKVEEGVVLGVDKRVTSKLIEPESIEKVYQIDTHIGAATAGLVAD 86          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA5_SOYBN (Proteasome subunit alpha type-5 OS=Glycine max GN=PAE1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.782e-12
Identity = 34/78 (43.59%), Postives = 53/78 (67.95%), Query Frame = 3
Query:  102 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            YDR +  FSPEGRLFQVEYA +A+K  G T+IG++ K+ V +  +K++   LL+ +SV  +  I +++G   +G+ AD
Sbjct:    8 YDRGVNTFSPEGRLFQVEYAIEAIK-LGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIAD 84          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA5_MOUSE (Proteasome subunit alpha type-5 OS=Mus musculus GN=Psma5 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.782e-12
Identity = 32/78 (41.03%), Postives = 52/78 (66.67%), Query Frame = 3
Query:  102 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            YDR +  FSPEGRLFQVEYA +A+K  G T+IG++  + VC+  +K++   L++ +S+  +  I  ++G   +G+ AD
Sbjct:    8 YDRGVNTFSPEGRLFQVEYAIEAIK-LGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIAD 84          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA5_HUMAN (Proteasome subunit alpha type-5 OS=Homo sapiens GN=PSMA5 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 1.782e-12
Identity = 32/78 (41.03%), Postives = 52/78 (66.67%), Query Frame = 3
Query:  102 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            YDR +  FSPEGRLFQVEYA +A+K  G T+IG++  + VC+  +K++   L++ +S+  +  I  ++G   +G+ AD
Sbjct:    8 YDRGVNTFSPEGRLFQVEYAIEAIK-LGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIAD 84          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA5_BOVIN (Proteasome subunit alpha type-5 OS=Bos taurus GN=PSMA5 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.782e-12
Identity = 32/78 (41.03%), Postives = 52/78 (66.67%), Query Frame = 3
Query:  102 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            YDR +  FSPEGRLFQVEYA +A+K  G T+IG++  + VC+  +K++   L++ +S+  +  I  ++G   +G+ AD
Sbjct:    8 YDRGVNTFSPEGRLFQVEYAIEAIK-LGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIAD 84          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA3_DROME (Proteasome subunit alpha type-3 OS=Drosophila melanogaster GN=Prosalpha7 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.782e-12
Identity = 35/81 (43.21%), Postives = 53/81 (65.43%), Query Frame = 3
Query:   93 GGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            G GYD   + FSP+GR+FQ++YA KAV+ +G T IG+RGKD+V +  +K +  KL +  +   +F I K +G+   G+ AD
Sbjct:    5 GTGYDLSASQFSPDGRVFQIDYASKAVEKSG-TVIGIRGKDAVVLAVEKIITSKLYEPDAGGRIFTIEKNIGMAVAGLVAD 84          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSMA1_HALMA (Proteasome subunit alpha 1 OS=Haloarcula marismortui GN=psmA1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.039e-12
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 3
Query:  102 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            YDR ITIFSP+GRL+QVEYA +AVK  G  SIGVR  D V +   K++   L++ +SV  +     ++G+ + G  AD
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVK-RGTASIGVRTSDGVVLAVDKRIRSPLMERSSVEKIHKADDHIGIASAGHVAD 86          
The following BLAST results are available for this feature:
BLAST of CF504218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
PSA5B_ARATH1.364e-1244.87Proteasome subunit alpha type-5-B OS=Arabidopsis t... [more]
PSA5A_ARATH1.364e-1244.87Proteasome subunit alpha type-5-A OS=Arabidopsis t... [more]
PSMA_THEGJ1.782e-1243.04Proteasome subunit alpha OS=Thermococcus gammatole... [more]
PSMA_METKA1.782e-1243.59Proteasome subunit alpha OS=Methanopyrus kandleri ... [more]
PSA5_SOYBN1.782e-1243.59Proteasome subunit alpha type-5 OS=Glycine max GN=... [more]
PSA5_MOUSE1.782e-1241.03Proteasome subunit alpha type-5 OS=Mus musculus GN... [more]
PSA5_HUMAN1.782e-1241.03Proteasome subunit alpha type-5 OS=Homo sapiens GN... [more]
PSA5_BOVIN1.782e-1241.03Proteasome subunit alpha type-5 OS=Bos taurus GN=P... [more]
PSA3_DROME1.782e-1243.21Proteasome subunit alpha type-3 OS=Drosophila mela... [more]
PSMA1_HALMA3.039e-1246.15Proteasome subunit alpha 1 OS=Haloarcula marismort... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-707 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-15_E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504218 ID=CF504218; Name=CF504218; organism=Citrus sinensis; type=EST; length=336bp
TGCGGATTGATCCGACAAGTAGAACTGCGTGAAGAAGAAAATTGAAAGAG
AGGAATCACTGTAGCGTATAATCAACAATGAGTAGAGGAAGTGGAGGAGG
ATACGATCGTCATATTACAATTTTTTCGCCTGAGGGTCGTCTCTTTCAAG
TCGAGTATGCTTTCAAAGCTGTTAAGGCTGCTGGGGTTACCTCTATTGGT
GTTCGAGGAAAGGATTCAGTCTGTGTTGTGACTCAGAAGAAGGTCCCGGA
CAAGCTTTTGGATCATACAAGTGTCACACATCTTTTCCCAATCACAAAGT
ACCTTGGATTGCTGGCAACTGGAATGACAGCTGATG
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