CF504218

Overview
NameCF504218
Unique NameCF504218
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length336
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9226 contig Csv1_Contig9226:54..389. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSMA_THEVO (Proteasome subunit alpha OS=Thermoplasma volcanium GN=psmA PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.969e-12
Identity = 34/78 (43.59%), Postives = 54/78 (69.23%), Query Frame = 3
Query:  102 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            YDR IT+FSP+GRLFQVEYA +AVK  G T++G++  + V +++ KK+  KL++  S+  +  I  Y+  + +G+ AD
Sbjct:    8 YDRAITVFSPDGRLFQVEYAREAVK-KGSTALGLKFSNGVLLISDKKIRSKLIEQNSLEKIQLIDDYVAAVTSGLVAD 84          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSMA_PYRHO (Proteasome subunit alpha OS=Pyrococcus horikoshii GN=psmA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.969e-12
Identity = 33/79 (41.77%), Postives = 53/79 (67.09%), Query Frame = 3
Query:   99 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            GYDR IT+FSP+GRLFQV YA +AVK  G T++GV+  + V +  +K++  +L++  S   +F I  ++   ++G+ AD
Sbjct:    9 GYDRAITVFSPDGRLFQVNYAREAVK-RGATAVGVKCNEGVVLAVEKRITSRLIEPESYEKIFQIDDHIAAASSGIIAD 86          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA7B_ORYSJ (Proteasome subunit alpha type-7-B OS=Oryza sativa subsp. japonica GN=PAD1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.969e-12
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 3
Query:  102 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            YDR IT+FSP+G LFQVEYA +AV+  G  ++GVRG D+V +  +KK   KL D  SV  +  +  ++ L   G+ AD
Sbjct:    4 YDRAITVFSPDGHLFQVEYALEAVR-KGNAAVGVRGSDTVVLGVEKKSTPKLQDSRSVRKIASLDTHIALACAGLKAD 80          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA7B_ORYSI (Proteasome subunit alpha type-7-B OS=Oryza sativa subsp. indica GN=PAD1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.969e-12
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 3
Query:  102 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            YDR IT+FSP+G LFQVEYA +AV+  G  ++GVRG D+V +  +KK   KL D  SV  +  +  ++ L   G+ AD
Sbjct:    4 YDRAITVFSPDGHLFQVEYALEAVR-KGNAAVGVRGSDTVVLGVEKKSTPKLQDSRSVRKIASLDTHIALACAGLKAD 80          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA7B_ARATH (Proteasome subunit alpha type-7-B OS=Arabidopsis thaliana GN=PAD2 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.969e-12
Identity = 35/78 (44.87%), Postives = 49/78 (62.82%), Query Frame = 3
Query:  102 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            YDR IT+FSP+G LFQVEYA +AV+  G  ++GVRG D+V +  +KK   KL D  S   +  +  ++ L   G+ AD
Sbjct:    4 YDRAITVFSPDGHLFQVEYALEAVR-KGNAAVGVRGTDTVVLAVEKKSTPKLQDSRSARKIVSLDNHIALACAGLKAD 80          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA7A_ARATH (Proteasome subunit alpha type-7-A OS=Arabidopsis thaliana GN=PAD1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.969e-12
Identity = 35/78 (44.87%), Postives = 49/78 (62.82%), Query Frame = 3
Query:  102 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            YDR IT+FSP+G LFQVEYA +AV+  G  ++GVRG D+V +  +KK   KL D  S   +  +  ++ L   G+ AD
Sbjct:    4 YDRAITVFSPDGHLFQVEYALEAVR-KGNAAVGVRGTDTVVLAVEKKSTPKLQDSRSARKIVSLDNHIALACAGLKAD 80          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSMA_THEAC (Proteasome subunit alpha OS=Thermoplasma acidophilum GN=psmA PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.184e-12
Identity = 34/78 (43.59%), Postives = 54/78 (69.23%), Query Frame = 3
Query:  102 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            YDR IT+FSP+GRLFQVEYA +AVK  G T++G++  + V +++ KKV  +L++  S+  +  I  Y+  + +G+ AD
Sbjct:    8 YDRAITVFSPDGRLFQVEYAREAVK-KGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLVAD 84          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSMA_SULAC (Proteasome subunit alpha OS=Sulfolobus acidocaldarius GN=psmA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.184e-12
Identity = 34/79 (43.04%), Postives = 53/79 (67.09%), Query Frame = 3
Query:   99 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            GYDR ITIFSP+G L+QV+YAF+AVK  G T++GV+ K  V ++ +K+   +LLD   +  +F +  ++G    G+ +D
Sbjct:    9 GYDRAITIFSPDGSLYQVDYAFEAVK-RGWTTLGVKTKSGVVLLAEKRKATQLLDVDGIEKIFMLDDHVGCTFAGLASD 86          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSMA_METJA (Proteasome subunit alpha OS=Methanocaldococcus jannaschii GN=psmA PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.184e-12
Identity = 34/78 (43.59%), Postives = 51/78 (65.38%), Query Frame = 3
Query:  102 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            YDR IT+FSPEGRL+QVEYA +AV+  G T+IG+  KD V +   +++  KL+   S+  +F I  ++    +G+ AD
Sbjct:    9 YDRAITVFSPEGRLYQVEYAREAVR-RGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAATSGLVAD 85          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSMA_HALSA (Proteasome subunit alpha OS=Halobacterium salinarium GN=psmA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.184e-12
Identity = 39/78 (50.00%), Postives = 50/78 (64.10%), Query Frame = 3
Query:  102 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            YDR ITIFSP+GRL+QVEYA +AVK  G  SIGVR  + V +V  K+    LL+ +SV  L  I  ++G  + G  AD
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVK-RGTASIGVRTPEGVVLVVDKQTRSPLLEGSSVEKLHKIDDHVGAASAGHVAD 86          
The following BLAST results are available for this feature:
BLAST of CF504218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
PSMA_THEVO3.969e-1243.59Proteasome subunit alpha OS=Thermoplasma volcanium... [more]
PSMA_PYRHO3.969e-1241.77Proteasome subunit alpha OS=Pyrococcus horikoshii ... [more]
PSA7B_ORYSJ3.969e-1246.15Proteasome subunit alpha type-7-B OS=Oryza sativa ... [more]
PSA7B_ORYSI3.969e-1246.15Proteasome subunit alpha type-7-B OS=Oryza sativa ... [more]
PSA7B_ARATH3.969e-1244.87Proteasome subunit alpha type-7-B OS=Arabidopsis t... [more]
PSA7A_ARATH3.969e-1244.87Proteasome subunit alpha type-7-A OS=Arabidopsis t... [more]
PSMA_THEAC5.184e-1243.59Proteasome subunit alpha OS=Thermoplasma acidophil... [more]
PSMA_SULAC5.184e-1243.04Proteasome subunit alpha OS=Sulfolobus acidocaldar... [more]
PSMA_METJA5.184e-1243.59Proteasome subunit alpha OS=Methanocaldococcus jan... [more]
PSMA_HALSA5.184e-1250.00Proteasome subunit alpha OS=Halobacterium salinari... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-707 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-15_E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504218 ID=CF504218; Name=CF504218; organism=Citrus sinensis; type=EST; length=336bp
TGCGGATTGATCCGACAAGTAGAACTGCGTGAAGAAGAAAATTGAAAGAG
AGGAATCACTGTAGCGTATAATCAACAATGAGTAGAGGAAGTGGAGGAGG
ATACGATCGTCATATTACAATTTTTTCGCCTGAGGGTCGTCTCTTTCAAG
TCGAGTATGCTTTCAAAGCTGTTAAGGCTGCTGGGGTTACCTCTATTGGT
GTTCGAGGAAAGGATTCAGTCTGTGTTGTGACTCAGAAGAAGGTCCCGGA
CAAGCTTTTGGATCATACAAGTGTCACACATCTTTTCCCAATCACAAAGT
ACCTTGGATTGCTGGCAACTGGAATGACAGCTGATG
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